Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3852 ATGGACGACGGGGAGCTTGATTTTTCGAATCAAGAAGTGTTTTCGAGCCCGATGGAGCTTCCTAGCAGTTGCTCAATGGATAGTTTCTTTGATGATCTTCTCAAAGATACTCACACTTGCACTCATACTCATACTTGTAATCCACCTGGCCCTGATTACTCACACACCCACACCTGTTTTCACGTCCACACTAAAATTGTCAATGCCCCAACTGAAGAAGACAAGGTTGTTACCGATGACACTGCTGAATCGACCGATAAGAAGTCAAAGAAACGCCCGTTTGGTAACCGGGAAGCTGTTCGTAAGTATCGCGAGAAGAAGAAGGCTAGGACGGCTTCATTAGAGGATGAGGTTGTTAGATTGAAGACTTTGAATCAGCATTTGATGAAGAGGTTACAGGGGCAGGCAGCACTGGAGGCTGAGGTTTCTAGGCTTAAGTGTTTGCTTGTGGATATTAGGGGCAGAATTGAAGGGGAGATTGGTTCTTTTCCTTACCAGAAAGTTGTTAATCCTAACTTGTCTAATCCAAACATCTCTGATGCTTATGTGATGAACCCATGTAATATGCAGTGTGAGGATCAGGTTTATTGCCTTCATCCTGGTGTTGATGGTAGCAGAAGTGGTGAAGGTGCTGTGATTAATGGACAAAGCCTTGGTGCTTGTGAATTTGAAAATCTTCAGTGTCTGGCGAATCATGACTTGGGATCGGAAGACCTGCCTGGATGCGGTATAGGGAGTGCGGTTTCAAATGATATTTCTTCAGGAGTGACGAAGAAAAAAGGAGGAAGCCAGAAAGAGACATGGACCTGGTGA 813 44.77 MDDGELDFSNQEVFSSPMELPSSCSMDSFFDDLLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKIVNAPTEEDKVVTDDTAESTDKKSKKRPFGNREAVRKYREKKKARTASLEDEVVRLKTLNQHLMKRLQGQAALEAEVSRLKCLLVDIRGRIEGEIGSFPYQKVVNPNLSNPNISDAYVMNPCNMQCEDQVYCLHPGVDGSRSGEGAVINGQSLGACEFENLQCLANHDLGSEDLPGCGIGSAVSNDISSGVTKKKGGSQKETWTW 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46897768 46900819 - Sed0002751.1 Sed04g3852 712455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3852 270 CDD bZIP 96 143 - -
Sed04g3852 270 Gene3D - 75 152 - -
Sed04g3852 270 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 133 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3852 270 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 184 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Sed04g3852 270 SUPERFAMILY Leucine zipper domain 88 134 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3852 270 Pfam Basic region leucine zipper 85 141 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3852 270 SMART brlzneu 83 151 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3852 270 MobiDBLite consensus disorder prediction 72 108 - -
Sed04g3852 270 MobiDBLite consensus disorder prediction 72 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3852 Sed-Chr4:46897768 Sed05g3493 Sed-Chr5:43687714 3.60E-73 dispersed
Sed04g3852 Sed-Chr4:46897768 Sed04g3853 Sed-Chr4:46897768 1.30E-128 tandem
Sed01g0191 Sed-Chr1:1506269 Sed04g3852 Sed-Chr4:46897768 7.50E-87 wgd
Sed04g3852 Sed-Chr4:46897768 Sed05g2217 Sed-Chr5:34956719 9.40E-106 wgd
Sed04g3852 Sed-Chr4:46897768 Sed05g3492 Sed-Chr5:43687714 9.50E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38378 PF07716 bZIP_2 4.70E-15 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3852 K25785 - csv:101208161 491.5