Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3884 ATGAGAAGTGCCACTTGCTCAGTGCCCTTTTCTTCTCCTCTACTAGACCATATGCAAAAGTTATCGAAGCCGATCCCAAAGGGATCAATCACTCCTCGACATAAGTTTATTTTAAAAGATAGGCCATCATTCAAGCCTCGCAGTTTTAATGATGAATTAAGCAACAGAATCAGGTCACCCTCCTCTCAGAGAGGGGAAAGAACTTCTATTTTCAAATGTGGGGGGTTCTCTGAGTCAGAATCCGACGTGTCCTTCATTAGCTCTGGCAGGCCAAGCTCGGAGCGTTCTATTGCATTTGACTACTCTGATTCTTCCCCACCGCGATTTTCGACCAGCTCAGATCAAAGCTTTGTATCTCTACCATCTAAAACAAAATGGGCAGACATGAGTAATTTCAATGATTTCTCATCAATTTCAGATGAGAGCTGCAGGACATCATTTTCCTTGTCATCTCAGAATTTGCATGATGATGCAGAGGTTGAAATGAGGAGGCTTAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCATGTAAAGAAGCACTAACAGCACAGAAGAAGGCAGTGGAACTACACAATTGGAGACGCGAAGATGAACAGAAACTAGAAGAGGCACGACTCGCACAAGAAGCAGCAATGGCTTTGGCGGAGCAGGAGAGAGCGAGATGCCAAGCAGCAATGGAAGCAGCTGATGCAGCAAAGAGAATTGCGGAGTTAGAATCACATAAAAGAGCAAATCTGGAGGTGAAATCACTTAAAGAAGCAGAGGAAATGCAGAAAGCACTGAAAAATCTTGCACAAAGCAACATCAGATACAGGAGATATACAATTCAGGAGATTGAATCAGCAACAGAACGTTTTACAAAATCTCGAAAAATTGGGGAAGGAGGTTATGGGCCAGTCTTTCGTTGTCGTCTCGATCACACATCGGTTGCGGTCAAGGTTTTGCGTCCCGATGCAACTCAAGGAAGGTCACAGTTTCAGCGAGAGATTGATATACTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTAGGAGCATGCCCAGAATATGGAATTCTAGTGTACGAGCACATGTCCAACGGAAGTTTGGAGGATCGACTCTTCCGAAAAGGGAACACCCCTGTTATTCCTTGGCAATATAGGTTCCGAATTGCTGCTGAGATTGCTACTGGCCTTCTGTTTCTTCATCAGACAAAGCCAGAGCCATTGGTGCACCGTGACCTCAAGCCAGCTAACATACTGCTAGACCACAATTATGTTAGCAAGATAAGCGATGTTGGTTTGGCTAGACTTGTACCTGCTGTGGCTGAAAATGTAACACAATGCTGCGTGACTTCGGCCGCTGGAACTTTCTGCTATATAGATCCTGAGTATCAACAAAGTGGAATACTTGGGGTTAAATCTGATGTGTATTCACTAGGTATCATGTTGCTTCAAATAATTACAGCGAAGCCACCCATGGGGTTGACTCACCACGTTGCTCGAGCTATTGAGAACGGGAATCTTGGGGAGCTTCTGGACCCAGCTGTGGATAATTGGCCGATGGAAGAAACACTTTTCTTCGCAAAATTAGCACTTCAATGCGCCGAACTTAGACGAAAAGACAGACCAGATCTTGGCACTGTTGTGTTGCCAGAACTTAACAAATTGAAAGAATTTGGTAAGGAGAAAATGGAGGCCATGTTGTCAAACGAGAGCAGTGGGAGCGATTTTAGCCAGGCCTCAATAGAGCAGGATGTAATGAGCGACCCACAACTAACCATGGCTTCGGAAAGTTCCCAAGAGCAAATCTAG 1806 44.63 MRSATCSVPFSSPLLDHMQKLSKPIPKGSITPRHKFILKDRPSFKPRSFNDELSNRIRSPSSQRGERTSIFKCGGFSESESDVSFISSGRPSSERSIAFDYSDSSPPRFSTSSDQSFVSLPSKTKWADMSNFNDFSSISDESCRTSFSLSSQNLHDDAEVEMRRLKLELKQTMEMYSTACKEALTAQKKAVELHNWRREDEQKLEEARLAQEAAMALAEQERARCQAAMEAADAAKRIAELESHKRANLEVKSLKEAEEMQKALKNLAQSNIRYRRYTIQEIESATERFTKSRKIGEGGYGPVFRCRLDHTSVAVKVLRPDATQGRSQFQREIDILSCIRHPNMVLLLGACPEYGILVYEHMSNGSLEDRLFRKGNTPVIPWQYRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVSKISDVGLARLVPAVAENVTQCCVTSAAGTFCYIDPEYQQSGILGVKSDVYSLGIMLLQIITAKPPMGLTHHVARAIENGNLGELLDPAVDNWPMEETLFFAKLALQCAELRRKDRPDLGTVVLPELNKLKEFGKEKMEAMLSNESSGSDFSQASIEQDVMSDPQLTMASESSQEQI 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47048391 47052532 + Sed0009556.1 Sed04g3884 712487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3884 601 FunFam Os07g0541700 protein 362 454 - -
Sed04g3884 601 SUPERFAMILY Protein kinase-like (PK-like) 270 547 IPR011009 -
Sed04g3884 601 Pfam Protein kinase domain 289 503 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3884 601 PANTHER OS02G0152300 PROTEIN 48 597 IPR051348 -
Sed04g3884 601 MobiDBLite consensus disorder prediction 566 601 - -
Sed04g3884 601 Gene3D Transferase(Phosphotransferase) domain 1 362 576 - -
Sed04g3884 601 MobiDBLite consensus disorder prediction 47 68 - -
Sed04g3884 601 ProSiteProfiles Protein kinase domain profile. 289 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3884 601 MobiDBLite consensus disorder prediction 48 68 - -
Sed04g3884 601 MobiDBLite consensus disorder prediction 563 601 - -
Sed04g3884 601 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 261 361 - -
Sed04g3884 601 Gene3D Phosphorylase Kinase; domain 1 265 361 - -
Sed04g3884 601 Coils Coil 201 235 - -
Sed04g3884 601 Coils Coil 155 175 - -
Sed04g3884 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3884 601 SMART serkin_6 289 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3884 Sed-Chr4:47048391 Sed05g2258 Sed-Chr5:35245229 4.20E-247 dispersed
Sed04g3884 Sed-Chr4:47048391 Sed04g3885 Sed-Chr4:47049771 4.4e-313 tandem
Sed04g3884 Sed-Chr4:47048391 Sed05g2257 Sed-Chr5:35245229 2.50E-252 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79105 PF00069 Pkinase 1.70E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3884 - - - 0.0