Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3885 ATGGAGCTTTGGAAAATAAAACTTGTATTAATTTTTCTGTCTGCAGATAGGCCATCATTCAAGCCTCGCAGTTTTAATGATGAATTAAGCAACAGAATCAGGTCACCCTCCTCTCAGAGAGGGGAAAGAACTTCTATTTTCAAATGTGGGGGGTTCTCTGAGTCAGAATCCGACGTGTCCTTCATTAGCTCTGGCAGGCCAAGCTCGGAGCGTTCTATTGCATTTGACTACTCTGATTCTTCCCCACCGCGATTTTCGACCAGCTCAGATCAAAGCTTTGTATCTCTACCATCTAAAACAAAATGGGCAGACATGAGTAATTTCAATGATTTCTCATCAATTTCAGATGAGAGCTGCAGGACATCATTTTCCTTGTCATCTCAGAATTTGCATGATGATGCAGAGGTTGAAATGAGGAGGCTTAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCATGTAAAGAAGCACTAACAGCACAGAAGAAGGCAGTGGAACTACACAATTGGAGACGCGAAGATGAACAGAAACTAGAAGAGGCACGACTCGCACAAGAAGCAGCAATGGCTTTGGCGGAGCAGGAGAGAGCGAGATGCCAAGCAGCAATGGAAGCAGCTGATGCAGCAAAGAGAATTGCGGAGTTAGAATCACATAAAAGAGCAAATCTGGAGGTGAAATCACTTAAAGAAGCAGAGGAAATGCAGAAAGCACTGAAAAATCTTGCACAAAGCAACATCAGATACAGGAGATATACAATTCAGGAGATTGAATCAGCAACAGAACGTTTTACAAAATCTCGAAAAATTGGGGAAGGAGGTTATGGGCCAGTCTTTCGTTGTCGTCTCGATCACACATCGGTTGCGGTCAAGGTTTTGCGTCCCGATGCAACTCAAGGAAGGTCACAGTTTCAGCGAGAGATTGATATACTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTAGGAGCATGCCCAGAATATGGAATTCTAGTGTACGAGCACATGTCCAACGGAAGTTTGGAGGATCGACTCTTCCGAAAAGGGAACACCCCTGTTATTCCTTGGCAATATAGGTTCCGAATTGCTGCTGAGATTGCTACTGGCCTTCTGTTTCTTCATCAGACAAAGCCAGAGCCATTGGTGCACCGTGACCTCAAGCCAGCTAACATACTGCTAGACCACAATTATGTTAGCAAGATAAGCGATGTTGGTTTGGCTAGACTTGTACCTGCTGTGGCTGAAAATGTAACACAATGCTGCGTGACTTCGGCCGCTGGAACTTTCTGCTATATAGATCCTGAGTATCAACAAAGTGGAATACTTGGGGTTAAATCTGATGTGTATTCACTAGGTATCATGTTGCTTCAAATAATTACAGCGAAGCCACCCATGGGGTTGACTCACCACGTTGCTCGAGCTATTGAGAACGGGAATCTTGGGGAGCTTCTGGACCCAGCTGTGGATAATTGGCCGATGGAAGAAACACTTTTCTTCGCAAAATTAGCACTTCAATGCGCCGAACTTAGACGAAAAGACAGACCAGATCTTGGCACTGTTGTGTTGCCAGAACTTAACAAATTGAAAGAATTTGGTAAGGAGAAAATGGAGGCCATGTTGTCAAACGAGAGCAGTGGGAGCGATTTTAGCCAGGCCTCAATAGAGCAGGATGTAATGAGCGACCCACAACTAACCATGGCTTCGGAAAGTTCCCAAGAGCAAATCTAG 1734 44.46 MELWKIKLVLIFLSADRPSFKPRSFNDELSNRIRSPSSQRGERTSIFKCGGFSESESDVSFISSGRPSSERSIAFDYSDSSPPRFSTSSDQSFVSLPSKTKWADMSNFNDFSSISDESCRTSFSLSSQNLHDDAEVEMRRLKLELKQTMEMYSTACKEALTAQKKAVELHNWRREDEQKLEEARLAQEAAMALAEQERARCQAAMEAADAAKRIAELESHKRANLEVKSLKEAEEMQKALKNLAQSNIRYRRYTIQEIESATERFTKSRKIGEGGYGPVFRCRLDHTSVAVKVLRPDATQGRSQFQREIDILSCIRHPNMVLLLGACPEYGILVYEHMSNGSLEDRLFRKGNTPVIPWQYRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVSKISDVGLARLVPAVAENVTQCCVTSAAGTFCYIDPEYQQSGILGVKSDVYSLGIMLLQIITAKPPMGLTHHVARAIENGNLGELLDPAVDNWPMEETLFFAKLALQCAELRRKDRPDLGTVVLPELNKLKEFGKEKMEAMLSNESSGSDFSQASIEQDVMSDPQLTMASESSQEQI 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47049771 47052532 + Sed0009556.2 Sed04g3885 712488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3885 577 Gene3D Phosphorylase Kinase; domain 1 241 337 - -
Sed04g3885 577 MobiDBLite consensus disorder prediction 539 577 - -
Sed04g3885 577 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 237 337 - -
Sed04g3885 577 Pfam Protein kinase domain 265 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3885 577 SUPERFAMILY Protein kinase-like (PK-like) 246 523 IPR011009 -
Sed04g3885 577 PANTHER OS02G0152300 PROTEIN 30 573 IPR051348 -
Sed04g3885 577 Coils Coil 177 211 - -
Sed04g3885 577 Coils Coil 131 151 - -
Sed04g3885 577 FunFam Os07g0541700 protein 338 430 - -
Sed04g3885 577 SMART serkin_6 265 527 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3885 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 383 395 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g3885 577 ProSiteProfiles Protein kinase domain profile. 265 527 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3885 577 Gene3D Transferase(Phosphotransferase) domain 1 338 552 - -
Sed04g3885 577 MobiDBLite consensus disorder prediction 542 577 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3885 Sed-Chr4:47049771 Sed05g2257 Sed-Chr5:35245229 8.10E-240 dispersed
Sed04g3884 Sed-Chr4:47048391 Sed04g3885 Sed-Chr4:47049771 4.4e-313 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79106 PF00069 Pkinase 1.60E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3885 - - - 0.0