Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3896 ATGGGTGATACTGATGATGCTCTTACGGATAGCATAAGAAATCTTCAATGTTCATCTGGTTTAAAGCATAATTTCTCTATGGATCAACTTAAAATTTCTCAAACGAACTGCTCACAAGGCCGTTCTCAGCATCTTCAGTCGAATTTTCTTGGAGATAATCATAGAAGAATTGGGATTCCGCCGCAGATCCCTCCAATCTCACCATATTCTCAGATTCCGATCTCGCTTCCGATGAATCAGCAAAGTTATAGCCCAGTTCCTACTCATTCTCGATCTTTATCTCAGTCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCTTGTCCAATTCGTGATTCCCCATCTTCATCAAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCACATTCTTTGTTGCCTCCCTCCTCACCTTATATGAGAGCCAATTCTTCTAAGATGGGAGATGCTTTACCCCCTCGTAAAGCCCATAGGCGGTCTAATAGCGATATTCCATTCGGATTATCTTCGATGATTCAGCCATCTCCTTTTCTCCCTCTCAGTGGCTCGGGTGGATTGGAGCGATCAACAAGTAGTAAAGAGAATGCTAGCATATTTAAGCCGGCCAACCAGTTTTTTAAAAGAGAATCTAGTTTGGAGATAAACATTGATAACAATTTTGAAGTAATGGGTGAAAAGAAGTCCGAAGGGGACACCGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTAAACTCCTCAGCTACCGACGACAAGAATGGTTGTGAGAATCGGGAGGATTTGGATAGCAGGGGCAGTGGAACAAAGACAGGGGGTGACAGCAGTGATAATGAGGCTGAAAGCAGTGTAAATGAAAGTGGGGATAACACTCAGATGGCTGGATTGAAGAGGGAAGGGAACAAAAGAACAGCGGGGGGAGATATTGCTCCAACTACCCGACATTACCGGAGTATCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTCGGTGATGAGTCGCCCAAAATGCCTCCAACACCACTTGGTGTTCATCCAGGGCAAATTTCTTCAAACAACGGATTCAGCTTGGAGTTTGGGAATGGCGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAGATTGCACTAACGGATCCCAAGCGTGTAAAGAGGATCTTGGCGAATCGTCAATCTGCTGCTCGATCTAAAGAACGAAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACACTTCTACAGCGAGATTCCGTTGGACTTACAAACCAGAATAATGAGCTTAAGTTCCGTCTCCAAGCAATGAATCAGCAAGCTCAACTTCGGGATGGTATTGGCACCTTTTCTCTGAATTCTTTTCTTCCAACACCTAATTGGGAAGGATTTTTCATCAAGCATTTAGTCATGAATTTATTTTTTTACTTTGTTAGCCTAATATTTCTTGTACATTGTCCCCAAGGGGTGGTATAG 1566 42.72 MGDTDDALTDSIRNLQCSSGLKHNFSMDQLKISQTNCSQGRSQHLQSNFLGDNHRRIGIPPQIPPISPYSQIPISLPMNQQSYSPVPTHSRSLSQSSFFSLDSLPPLSPCPIRDSPSSSNSDQVSADTSMEDRDNSSHSLLPPSSPYMRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQPSPFLPLSGSGGLERSTSSKENASIFKPANQFFKRESSLEINIDNNFEVMGEKKSEGDTVDDLFSAYMNLDNIDLLNSSATDDKNGCENREDLDSRGSGTKTGGDSSDNEAESSVNESGDNTQMAGLKREGNKRTAGGDIAPTTRHYRSISMDSFMGKLQFGDESPKMPPTPLGVHPGQISSNNGFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRVKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMNQQAQLRDGIGTFSLNSFLPTPNWEGFFIKHLVMNLFFYFVSLIFLVHCPQGVV 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47107430 47111687 - Sed0022902.2 Sed04g3896 712499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3896 521 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 397 460 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3896 521 Pfam Basic region leucine zipper 396 448 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3896 521 MobiDBLite consensus disorder prediction 280 306 - -
Sed04g3896 521 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 145 477 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g3896 521 SMART brlzneu 395 459 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3896 521 MobiDBLite consensus disorder prediction 51 73 - -
Sed04g3896 521 Coils Coil 415 449 - -
Sed04g3896 521 MobiDBLite consensus disorder prediction 265 279 - -
Sed04g3896 521 Gene3D - 398 451 - -
Sed04g3896 521 CDD bZIP_plant_RF2 400 449 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3896 521 MobiDBLite consensus disorder prediction 258 326 - -
Sed04g3896 521 FunFam probable transcription factor PosF21 398 451 - -
Sed04g3896 521 SUPERFAMILY Leucine zipper domain 399 450 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g3896 521 MobiDBLite consensus disorder prediction 109 178 - -
Sed04g3896 521 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3896 Sed-Chr4:47107430 Sed05g2280 Sed-Chr5:35370118 1.10E-203 dispersed
Sed04g3895 Sed-Chr4:47107430 Sed04g3896 Sed-Chr4:47107430 5.30E-262 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38383 PF00170 bZIP_1 1.50E-08 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3896 - - - 0.0