Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3907 ATGAAGATCCGTTGCGATGTCTGTGATCGAGTTGAGGCCTCTGTGTTTTGCTCTGCCGATGAAGCTGCTCTTTGCCATGGCTGTGATCTTCATGTTCACCGCGCTAACAAGCTCGCCGGAAAACACTCCAGGTTTTCCCTGCTTCAGCCGATCAAATCGGATTCTCCTCTTTGCGATATTTGTCAGGAACGGCGCGCGCTTGTGTTCTGTCAACAAGATAGGGCGATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACACACGCAGAAGCACAGTCGATTTCTTCTCACAGGCGTGAAGCTTTCTTCCACTTGTTTTTCGTACCAAACATCCTCTTCCTCCATTGGCAATGATGATGATGCCGCCATGGATGTTAAATCTGGAACCTCCAACGCTTGCAGCAAGAGGCCGAAAAAGGCCGGGAACGAGATCTCGAGCTCTCATTCAGCTGCCAAAGCTGCTCCGTCTTCGAATCACAAGGTCGAAGACGGCCAAGCAAGCGACGGCGGCTCGTTCTCGACGAGCAGGATATCGGAGTATCTGGAGGGGCTGCCTGGATGGTGCGTGGACGAGTTTCTCGATCAACCTTCCACAGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCCAAATTCTGGCATTTGAGAATCAAAATCTGGAGATTCAGCAAGAATTGCCAGGCAACTTCAGATTTGACAACACCTTGGAATTTTTAGGTAAATTTTCTCAAATTAGGCCTTGGAATGGAGTAATAAGAATAATCTCCATGAAAAATTGTAGAGGTGAAAAAAAGTGGTGGTTGATAAGATCATCAGCAGCTTTTTCTCTAGAAAACAAATCTGGTAAAATGAAAGAACAAACTGAAACTAACTTTTTGTTTGTTTTGTTTGTTTTGTTTGTTGTTGATGATTTGCAAATGTTACCTTACCTCCACTCTTTTTGTGAGTTGTTATTCCTTTTGCTAAATTCTTTACTGGTTATGATGAGAATGGAATCAAAATCTTTTTGGTTTGATTGGGCAATAAGCAACTCCATATTTTTACTAATATTAGAATGA 1068 43.63 MKIRCDVCDRVEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLQPIKSDSPLCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSSTCFSYQTSSSSIGNDDDAAMDVKSGTSNACSKRPKKAGNEISSSHSAAKAAPSSNHKVEDGQASDGGSFSTSRISEYLEGLPGWCVDEFLDQPSTAAANRFCKFNGQILAFENQNLEIQQELPGNFRFDNTLEFLGKFSQIRPWNGVIRIISMKNCRGEKKWWLIRSSAAFSLENKSGKMKEQTETNFLFVLFVLFVVDDLQMLPYLHSFCELLFLLLNSLLVMMRMESKSFWFDWAISNSIFLLILE 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47225247 47227116 - Sed0001238.1 Sed04g3907 712510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3907 355 MobiDBLite consensus disorder prediction 147 175 - -
Sed04g3907 355 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 232 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed04g3907 355 FunFam B-box zinc finger protein 21 1 98 - -
Sed04g3907 355 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed04g3907 355 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 CDD Bbox1_BBX-like 57 100 IPR049808 -
Sed04g3907 355 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 Gene3D Classic Zinc Finger 1 98 - -
Sed04g3907 355 MobiDBLite consensus disorder prediction 130 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3907 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3907 Sed-Chr4:47225247 Sed11g1069 Sed-Chr11:26168050 2.80E-41 dispersed
Sed03g1716 Sed-Chr3:11151192 Sed04g3907 Sed-Chr4:47225247 5.50E-46 wgd
Sed04g3907 Sed-Chr4:47225247 Sed05g3539 Sed-Chr5:44017457 2.90E-46 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1659 . 1 331 C2C2-CO-like Transcription Factor Family AT5G24930 63.8 2.7e-76 283.5
Sed11g1127 . 1 307 C2C2-CO-like Transcription Factor Family AT5G24930 56.2 3.7e-65 246.5
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 53.3 1.1e-80 298.1
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 53.3 1.1e-80 298.1
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0600 . 85 296 C2C2-CO-like Transcription Factor Family AT3G07650 58.1 9.4e-56 215.3
Sed01g0598 . 85 296 C2C2-CO-like Transcription Factor Family AT3G07650 58.1 9.4e-56 215.3
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0600 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0598 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0600 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0598 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed04g3907 . 1 198 C2C2-CO-like Transcription Factor Family AT1G75540 56.9 4.8e-51 199.5
Sed04g1531 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 1.7e-74 277.3
Sed13g0882 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 8.2e-55 211.1
Sed07g1631 . 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 63.1 1.6e-53 206.8
Sed10g0979 . 1 144 C2C2-CO-like Transcription Factor Family AT2G21320 65.1 6.7e-49 191.4
Sed13g0882 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.2 2.3e-55 213.0
Sed07g1631 . 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.3e-53 207.2
Sed10g0979 . 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 67.8 3.4e-51 199.1
Sed04g3907 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 56.3 2.4e-52 203.4
Sed03g1716 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.2 1.6e-43 174.1
Sed03g1717 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.2 1.6e-43 174.1
Sed05g3539 . 1 177 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 2.3e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38386 PF00643 zf-B_box 6.40E-07 No_clan Sed TF