Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3907 ATGAAGATCCGTTGCGATGTCTGTGATCGAGTTGAGGCCTCTGTGTTTTGCTCTGCCGATGAAGCTGCTCTTTGCCATGGCTGTGATCTTCATGTTCACCGCGCTAACAAGCTCGCCGGAAAACACTCCAGGTTTTCCCTGCTTCAGCCGATCAAATCGGATTCTCCTCTTTGCGATATTTGTCAGGAACGGCGCGCGCTTGTGTTCTGTCAACAAGATAGGGCGATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACACACGCAGAAGCACAGTCGATTTCTTCTCACAGGCGTGAAGCTTTCTTCCACTTGTTTTTCGTACCAAACATCCTCTTCCTCCATTGGCAATGATGATGATGCCGCCATGGATGTTAAATCTGGAACCTCCAACGCTTGCAGCAAGAGGCCGAAAAAGGCCGGGAACGAGATCTCGAGCTCTCATTCAGCTGCCAAAGCTGCTCCGTCTTCGAATCACAAGGTCGAAGACGGCCAAGCAAGCGACGGCGGCTCGTTCTCGACGAGCAGGATATCGGAGTATCTGGAGGGGCTGCCTGGATGGTGCGTGGACGAGTTTCTCGATCAACCTTCCACAGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCCAAATTCTGGCATTTGAGAATCAAAATCTGGAGATTCAGCAAGAATTGCCAGGCAACTTCAGATTTGACAACACCTTGGAATTTTTAGGTAAATTTTCTCAAATTAGGCCTTGGAATGGAGTAATAAGAATAATCTCCATGAAAAATTGTAGAGGTGAAAAAAAGTGGTGGTTGATAAGATCATCAGCAGCTTTTTCTCTAGAAAACAAATCTGGTAAAATGAAAGAACAAACTGAAACTAACTTTTTGTTTGTTTTGTTTGTTTTGTTTGTTGTTGATGATTTGCAAATGTTACCTTACCTCCACTCTTTTTGTGAGTTGTTATTCCTTTTGCTAAATTCTTTACTGGTTATGATGAGAATGGAATCAAAATCTTTTTGGTTTGATTGGGCAATAAGCAACTCCATATTTTTACTAATATTAGAATGA 1068 43.63 MKIRCDVCDRVEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLQPIKSDSPLCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSSTCFSYQTSSSSIGNDDDAAMDVKSGTSNACSKRPKKAGNEISSSHSAAKAAPSSNHKVEDGQASDGGSFSTSRISEYLEGLPGWCVDEFLDQPSTAAANRFCKFNGQILAFENQNLEIQQELPGNFRFDNTLEFLGKFSQIRPWNGVIRIISMKNCRGEKKWWLIRSSAAFSLENKSGKMKEQTETNFLFVLFVLFVVDDLQMLPYLHSFCELLFLLLNSLLVMMRMESKSFWFDWAISNSIFLLILE 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47225247 47227116 - Sed0001238.1 Sed04g3907 712510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3907 355 MobiDBLite consensus disorder prediction 147 175 - -
Sed04g3907 355 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 232 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed04g3907 355 FunFam B-box zinc finger protein 21 1 98 - -
Sed04g3907 355 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed04g3907 355 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 CDD Bbox1_BBX-like 57 100 IPR049808 -
Sed04g3907 355 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Sed04g3907 355 Gene3D Classic Zinc Finger 1 98 - -
Sed04g3907 355 MobiDBLite consensus disorder prediction 130 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3907 Sed-Chr4:47225247 Sed11g1069 Sed-Chr11:26168050 2.80E-41 dispersed
Sed03g1716 Sed-Chr3:11151192 Sed04g3907 Sed-Chr4:47225247 5.50E-46 wgd
Sed04g3907 Sed-Chr4:47225247 Sed05g3539 Sed-Chr5:44017457 2.90E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38386 PF00643 zf-B_box 6.40E-07 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3907 - - - 0.0