Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3910 ATGGCGTCCGATTCTTCTCCAGTTAACTTCAATACAGGTCCTTCGTCGCCCGACGATTCCTTCTCTAGTCCCATTGGAAACACAGTGTCGTCCACAGGAGATGGTTCTAGCCGCCGAAGCCGTCGCCGGTCGTCTACTCCTTCCGAATTTGCTACGCCGCCGCGTCAACGATCCCGGTTAGCCTCGTCTGAAACTTCTCCGACGGCTACGGAGCCCCGCTCGCGCGGGCGAGGTGGTAGGCGAAGAGCTTCCAGTAGCCGAGCGACGCCAGTGGTGGCTACACCTACCTCAACAGATGATATTCCGCCGTCGACCGAACCGGGCGATGGCGACGACATGGATGAGGACCATCCGACTTTTGTTTGGGGGACGAATATCAGTGTTGATGATGTCAAGGGAGCGATTATTAGGTTTTTGAGGCATTTTCGCCATCGGCAGGCGTCGCAGTCCGAAGGGGATTTTCATGCCGAGGGAAAATATGCGGAGGCAATCAAGCAGGTTCTTGAAAGGGAAGGGGATTCGCTTGATGTGGATGCGCAGGATGTGTTTAGTTACGATGCTGATTTGTATACGAAGATGGTCAGGTATCCTCTCGAGGTTCTTGCAATCTTTGATATTGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTTGAAAAGCACATTCAAACGCGGATATTCAATCTCAAAACTTCTACTTCAATGAGGAATCTTAACCCTTCTGACATTGAGAGGATGATATCGCTGAAGGGAATGATCATACGGTCTAGTTCGATAATTCCTGAGATCAGGGAGGCAATATTTAGATGTCTCGTGTGTGGATTCTACACTGACCCTGTATCTATTGAAAGAGGACGCATAACTGAGCCCATTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAACTCCATGACACTGGTTCACAATCGGTGCAGGTTTGCTGATAAGCAGATTGTGCGGCTTCAGGAGACTCCTGATGAGATACCCGAAGGAGGGACACCTCATACTGTAAGCCTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGATAGAGTTGAGGTCACCGGGATATACAGGGCCATGAGTGTTAGAGTTGGACCAACCCAGAGAACTGTGAAATCATTATTCAAGACTTATATTGACTGTCTTCATATAAAGAAGGCTGATAAGTCAAGAATGATGGCAGAGGACACGAGAGAAGTTGAGAACCAGGTTGGCGCAAACATAGATGATCTCTCATTTGATGAAGCGAAGGTGGAAGAGTTGAAAGAACTCTCCAAAAAACCTGATATATATGACAGACTAACCAGATCACTGGCACCAAATATTTGGGAGCTTGATGACGTAAAGAAAGGCCTTCTTTGCCAGCTCTTCGGTGGGAGTGCTTTAAAATTGTCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAATCTCAGCTTCTGCAATATATACATAAGCTATCTCCTCGTGGTATTTACACCAGTGGCAGGGGTAGTTCTGCTGTTGGTTTGACTGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACTGTACTGGAGAGTGGAGCCTTAGTTTTGAGTGACAGGGGCATATGCTGCATTGATGAATTCGACAAAATGTCTGAAAATGCTAGAAGCATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATCGCGAAGGCTGGAATCATTGCTTCCCTCAATGCCAGAACTTCAGTCTTAGCTTGTGCAAATCCTAGTGGTTCGCGTTATAACCCTCGCCTGTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATTTAATTCTGGATAAAGCTGACGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCTCACTACACTTCGACAACCCAGAGGGAATTGAACAGGATTTCATAGACCTTCATACCTTGACTTCATATGTTAGCTATGCTAGGAAAAATATTCATCCACAATTGTCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGATGAGGAGGAGAGGAAACTTTCCAGGCAGTAGCAAGAAGGTGATAACAGCTACTCCCAGACAGATCGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGTATACGTTTCTCAGAATGGGTTGAAAAGGGCGACGTTCTTGAGGCTTTCCGTCTTCTCGAAGTTGCAATGCAACAGTCTGCAACAGATCATTCTACAGGAACCATTGACATGGATCTGATCACCACGGGTGTATCGGCAAGTGAAAGGATGCGAAGAGAGACTATATTATCTGCTACTCGCAACATTATTATGGAGAAAATGAATCTTGGAGGACCCTCAATGCGCCTGACAGAGTTGCTGGAGGAGCTGAAGAAACAGAATCCTAATAACGAAGTCCACCTCAACAACCTTAGGAATGCGCTGTCAACACTTGCAAGTGAGGGGTTTTTAGCAATCCAGGGTGATAGCATTAAGAGAATATGA 2538 46.22 MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSTGDGSSRRSRRRSSTPSEFATPPRQRSRLASSETSPTATEPRSRGRGGRRRASSSRATPVVATPTSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRHRQASQSEGDFHAEGKYAEAIKQVLEREGDSLDVDAQDVFSYDADLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMISLKGMIIRSSSIIPEIREAIFRCLVCGFYTDPVSIERGRITEPIICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMMAEDTREVENQVGANIDDLSFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLSSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFIDLHTLTSYVSYARKNIHPQLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRETILSATRNIIMEKMNLGGPSMRLTELLEELKKQNPNNEVHLNNLRNALSTLASEGFLAIQGDSIKRI 845
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 47255122 47261357 + Sed0007341.1 Sed04g3910 712513
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3910 845 MobiDBLite consensus disorder prediction 87 103 - -
Sed04g3910 845 Pfam MCM N-terminal domain 135 229 IPR027925 -
Sed04g3910 845 Gene3D - 236 375 IPR012340 -
Sed04g3910 845 Pfam MCM AAA-lid domain 661 747 IPR041562 -
Sed04g3910 845 SUPERFAMILY Nucleic acid-binding proteins 152 386 IPR012340 -
Sed04g3910 845 Pfam MCM P-loop domain 423 645 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed04g3910 845 ProSitePatterns MCM family signature. 544 552 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Sed04g3910 845 Gene3D - 125 230 - -
Sed04g3910 845 Pfam MCM OB domain 236 365 IPR033762 -
Sed04g3910 845 Gene3D - 263 315 - -
Sed04g3910 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 536 550 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed04g3910 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 615 623 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed04g3910 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 588 600 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed04g3910 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 564 577 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed04g3910 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 491 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed04g3910 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 761 IPR027417 -
Sed04g3910 845 Coils Coil 805 825 - -
Sed04g3910 845 FunFam DNA helicase 416 754 - -
Sed04g3910 845 MobiDBLite consensus disorder prediction 1 114 - -
Sed04g3910 845 FunFam DNA helicase 263 315 - -
Sed04g3910 845 Gene3D - 413 753 IPR027417 -
Sed04g3910 845 MobiDBLite consensus disorder prediction 1 35 - -
Sed04g3910 845 Gene3D - 754 838 IPR036388 -
Sed04g3910 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 309 321 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Sed04g3910 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 749 758 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Sed04g3910 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 597 614 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Sed04g3910 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 451 462 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Sed04g3910 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 258 271 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Sed04g3910 845 MobiDBLite consensus disorder prediction 46 72 - -
Sed04g3910 845 CDD MCM4 438 747 - -
Sed04g3910 845 SMART mcm 232 749 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed04g3910 845 ProSiteProfiles MCM family domain profile. 435 641 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed04g3910 845 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 123 822 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0741 Sed-Chr2:45163252 Sed04g3910 Sed-Chr4:47255122 1.40E-77 dispersed
Sed02g0928 Sed-Chr2:46726658 Sed04g3910 Sed-Chr4:47255122 1.10E-92 dispersed
Sed02g0929 Sed-Chr2:46726658 Sed04g3910 Sed-Chr4:47255122 1.10E-92 dispersed
Sed04g3910 Sed-Chr4:47255122 Sed14g1703 Sed-Chr14:24882833 4.50E-98 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3910 K02212 - csv:101211850 1489.94