Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g3910 | ATGGCGTCCGATTCTTCTCCAGTTAACTTCAATACAGGTCCTTCGTCGCCCGACGATTCCTTCTCTAGTCCCATTGGAAACACAGTGTCGTCCACAGGAGATGGTTCTAGCCGCCGAAGCCGTCGCCGGTCGTCTACTCCTTCCGAATTTGCTACGCCGCCGCGTCAACGATCCCGGTTAGCCTCGTCTGAAACTTCTCCGACGGCTACGGAGCCCCGCTCGCGCGGGCGAGGTGGTAGGCGAAGAGCTTCCAGTAGCCGAGCGACGCCAGTGGTGGCTACACCTACCTCAACAGATGATATTCCGCCGTCGACCGAACCGGGCGATGGCGACGACATGGATGAGGACCATCCGACTTTTGTTTGGGGGACGAATATCAGTGTTGATGATGTCAAGGGAGCGATTATTAGGTTTTTGAGGCATTTTCGCCATCGGCAGGCGTCGCAGTCCGAAGGGGATTTTCATGCCGAGGGAAAATATGCGGAGGCAATCAAGCAGGTTCTTGAAAGGGAAGGGGATTCGCTTGATGTGGATGCGCAGGATGTGTTTAGTTACGATGCTGATTTGTATACGAAGATGGTCAGGTATCCTCTCGAGGTTCTTGCAATCTTTGATATTGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTTGAAAAGCACATTCAAACGCGGATATTCAATCTCAAAACTTCTACTTCAATGAGGAATCTTAACCCTTCTGACATTGAGAGGATGATATCGCTGAAGGGAATGATCATACGGTCTAGTTCGATAATTCCTGAGATCAGGGAGGCAATATTTAGATGTCTCGTGTGTGGATTCTACACTGACCCTGTATCTATTGAAAGAGGACGCATAACTGAGCCCATTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAACTCCATGACACTGGTTCACAATCGGTGCAGGTTTGCTGATAAGCAGATTGTGCGGCTTCAGGAGACTCCTGATGAGATACCCGAAGGAGGGACACCTCATACTGTAAGCCTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGATAGAGTTGAGGTCACCGGGATATACAGGGCCATGAGTGTTAGAGTTGGACCAACCCAGAGAACTGTGAAATCATTATTCAAGACTTATATTGACTGTCTTCATATAAAGAAGGCTGATAAGTCAAGAATGATGGCAGAGGACACGAGAGAAGTTGAGAACCAGGTTGGCGCAAACATAGATGATCTCTCATTTGATGAAGCGAAGGTGGAAGAGTTGAAAGAACTCTCCAAAAAACCTGATATATATGACAGACTAACCAGATCACTGGCACCAAATATTTGGGAGCTTGATGACGTAAAGAAAGGCCTTCTTTGCCAGCTCTTCGGTGGGAGTGCTTTAAAATTGTCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAATCTCAGCTTCTGCAATATATACATAAGCTATCTCCTCGTGGTATTTACACCAGTGGCAGGGGTAGTTCTGCTGTTGGTTTGACTGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACTGTACTGGAGAGTGGAGCCTTAGTTTTGAGTGACAGGGGCATATGCTGCATTGATGAATTCGACAAAATGTCTGAAAATGCTAGAAGCATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATCGCGAAGGCTGGAATCATTGCTTCCCTCAATGCCAGAACTTCAGTCTTAGCTTGTGCAAATCCTAGTGGTTCGCGTTATAACCCTCGCCTGTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATTTAATTCTGGATAAAGCTGACGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCTCACTACACTTCGACAACCCAGAGGGAATTGAACAGGATTTCATAGACCTTCATACCTTGACTTCATATGTTAGCTATGCTAGGAAAAATATTCATCCACAATTGTCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGATGAGGAGGAGAGGAAACTTTCCAGGCAGTAGCAAGAAGGTGATAACAGCTACTCCCAGACAGATCGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGTATACGTTTCTCAGAATGGGTTGAAAAGGGCGACGTTCTTGAGGCTTTCCGTCTTCTCGAAGTTGCAATGCAACAGTCTGCAACAGATCATTCTACAGGAACCATTGACATGGATCTGATCACCACGGGTGTATCGGCAAGTGAAAGGATGCGAAGAGAGACTATATTATCTGCTACTCGCAACATTATTATGGAGAAAATGAATCTTGGAGGACCCTCAATGCGCCTGACAGAGTTGCTGGAGGAGCTGAAGAAACAGAATCCTAATAACGAAGTCCACCTCAACAACCTTAGGAATGCGCTGTCAACACTTGCAAGTGAGGGGTTTTTAGCAATCCAGGGTGATAGCATTAAGAGAATATGA | 2538 | 46.22 | MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSTGDGSSRRSRRRSSTPSEFATPPRQRSRLASSETSPTATEPRSRGRGGRRRASSSRATPVVATPTSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRHRQASQSEGDFHAEGKYAEAIKQVLEREGDSLDVDAQDVFSYDADLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMISLKGMIIRSSSIIPEIREAIFRCLVCGFYTDPVSIERGRITEPIICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMMAEDTREVENQVGANIDDLSFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLSSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFIDLHTLTSYVSYARKNIHPQLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRETILSATRNIIMEKMNLGGPSMRLTELLEELKKQNPNNEVHLNNLRNALSTLASEGFLAIQGDSIKRI | 845 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 47255122 | 47261357 | + | Sed0007341.1 | Sed04g3910 | 712513 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g3910 | 845 | MobiDBLite | consensus disorder prediction | 87 | 103 | - | - | |
| Sed04g3910 | 845 | Pfam | MCM N-terminal domain | 135 | 229 | IPR027925 | - | |
| Sed04g3910 | 845 | Gene3D | - | 236 | 375 | IPR012340 | - | |
| Sed04g3910 | 845 | Pfam | MCM AAA-lid domain | 661 | 747 | IPR041562 | - | |
| Sed04g3910 | 845 | SUPERFAMILY | Nucleic acid-binding proteins | 152 | 386 | IPR012340 | - | |
| Sed04g3910 | 845 | Pfam | MCM P-loop domain | 423 | 645 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed04g3910 | 845 | ProSitePatterns | MCM family signature. | 544 | 552 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Sed04g3910 | 845 | Gene3D | - | 125 | 230 | - | - | |
| Sed04g3910 | 845 | Pfam | MCM OB domain | 236 | 365 | IPR033762 | - | |
| Sed04g3910 | 845 | Gene3D | - | 263 | 315 | - | - | |
| Sed04g3910 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 536 | 550 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed04g3910 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 615 | 623 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed04g3910 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 588 | 600 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed04g3910 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 564 | 577 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed04g3910 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 476 | 491 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed04g3910 | 845 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 446 | 761 | IPR027417 | - | |
| Sed04g3910 | 845 | Coils | Coil | 805 | 825 | - | - | |
| Sed04g3910 | 845 | FunFam | DNA helicase | 416 | 754 | - | - | |
| Sed04g3910 | 845 | MobiDBLite | consensus disorder prediction | 1 | 114 | - | - | |
| Sed04g3910 | 845 | FunFam | DNA helicase | 263 | 315 | - | - | |
| Sed04g3910 | 845 | Gene3D | - | 413 | 753 | IPR027417 | - | |
| Sed04g3910 | 845 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Sed04g3910 | 845 | Gene3D | - | 754 | 838 | IPR036388 | - | |
| Sed04g3910 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 309 | 321 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed04g3910 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 749 | 758 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed04g3910 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 597 | 614 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed04g3910 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 451 | 462 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed04g3910 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 258 | 271 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed04g3910 | 845 | MobiDBLite | consensus disorder prediction | 46 | 72 | - | - | |
| Sed04g3910 | 845 | CDD | MCM4 | 438 | 747 | - | - | |
| Sed04g3910 | 845 | SMART | mcm | 232 | 749 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed04g3910 | 845 | ProSiteProfiles | MCM family domain profile. | 435 | 641 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed04g3910 | 845 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 123 | 822 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g0741 | Sed-Chr2:45163252 | Sed04g3910 | Sed-Chr4:47255122 | 1.40E-77 | dispersed | |
| Sed02g0928 | Sed-Chr2:46726658 | Sed04g3910 | Sed-Chr4:47255122 | 1.10E-92 | dispersed | |
| Sed02g0929 | Sed-Chr2:46726658 | Sed04g3910 | Sed-Chr4:47255122 | 1.10E-92 | dispersed | |
| Sed04g3910 | Sed-Chr4:47255122 | Sed14g1703 | Sed-Chr14:24882833 | 4.50E-98 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g3910 | K02212 | - | csv:101211850 | 1489.94 |