Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3911 ATGGGCGATACCCGACGCGGCTGCTGCCCATCCATGGATCTGTTCCGCTCCGAGCCGATGCAGCTTGTGCAGCTCATTATTCCCGTCGAGTCTGCGCATCGCTCCATCTCCTACCTCGGTGATCTCGGCCTTCTCCAGTTTAAAGATCTCAATGCCGAGAAAAGTCCATTCCAGCGTACATATGCTGCGCAGATTAAAAGATGTGGAGAGATGGCGCGCAAATTGCACTTTTTCAAGGAACAGATGTTGAAGGCTGGATTATCAAGCAAAAGCTCTGTCTCACAAGTTGATATCAGTATAGATGACCTTGAGCTCAAACTTGGTGAGCTTGAGGGTGAACTAGTTGAGATAAATGCTAATAGTGAGAAGCTACAGCGTTCCTTCAATGAACTTGTGGAGTACAAGCTTGTTCTGCAGAAGGCTGGTGAGTTTTTCAGGTCAGCGCAAAGCAGTGCCATAGTGCAGCAAAGAGAATCTGAATCACGACAAGTTGATGGAGATTCAATTGAAGTTCCATTGTTGTTGGAACAAGAATCATTTGTGGATCAGTCAAAGCCATTTAATTTGGGATTTCTCTCTGGTCTTGTTCCTCGGGTAAAATCAATGGCATTTGAGCGGATGCTATTTCGTGCTACCAGGGGTAATGTGTTTCTGAAGCAGGCTGCAATTGAGGATCCTGTTGTAGATCCTATTTCTAGCGAGAAGGTTGAGAAAAACGTGTTTGTTGTTTTTTACTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGTGAGGCATTTGGTGCTAACCGGTACCCTTTTGATGAGGACTTCGGGAAACAATCCCAAATGATCGATGAGGTTTCTGGAAAACTGTCTGATCTGAAGACTACAATAGACGTTGGGCTGCTGCACAGGGGTAATCTGTTGCAGACTATTGGAGAACATTTTGAAAATTGGAATCTCATGGTGAGGAAAGAAAAATCCATATACCATATCTTGAACATGCTTAGCGTTGATGTAACCAAAAAATGTCTGGTTGCCGAGGGGTGGGGTCCTGTTTTTGCAACAAAGCAGATTCAAGATGCACTCTACCGGGCAGCATCCGATTCCAACTCTCAAGTTGGACCAATTTTCCAGGTTTTATTAACTACAGAAGTGCCACCTACTTATTTTCAGACGAACAAATTCTCCTCTGCTTTTCAAGAAATTGTGGATGCATATGGGGTGGCGAAGTATCAAGAGGCAAATCCTGGTGTATACACCATTATCACGTTCCCATTTCTATTTGCTGTTATGTTTGGTGATTGGGGACATGGAATATGTCTGTTACTTGCAACACTGTATTTTATATTACGGGAAAAAAAACTTTCTTCTCAGAAGCTTGGAGATATCACTCAAATGGCCTTTGGTGGACGCTATGTCATTTTAATGATGTCACTATTTTCAATATACACGGGTCTGATCTATAATGAGTTCTTCTCGGTCCCATTTGAACTGTTTGGTCGCTCAGCATATGCATGTCGTAGTCCTGATTGCAGTGATTCTGCTACTGCGGGGTTGGTAAAAGTCGGCTCTACATATTCATTTGGCTTGGATCCTGTATGGCATGGCACTCGAAGTGAGCTTCCGTTCCTTAACTCTCTGAAAATGAAAATGTCGATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTTTTTCAATGCTACATTTTTCCGGAACAGCATCAATGTCTGGTTTCAGTTCCTGCCACAGATAATATTTCTGAACAGCCTTTTCGGCTATCTTTCCCTTCTCATCATCATAAAGTGGGTCACTGGTTCAAACGCTGATCTGTACCACGTAATGATATACATGTTTCTTGGCCCCACCGATGATCTGGGTGAAAATCAGCTTTTTCCTGGGCAGAAAAATGTTCAGATTGTGCTTCTCTTACTGGCCCTTATTGCCGTGCCATGGATGCTGCTTCCAAAGCCTTTTCTTTTGAAGAAACAGCACGAACAGAGGTTCCAAGGCGATTCTTATGCTCCACTTCCAAGTGCTGATGATTCCCATGAGTTGGACTCGCATCATGATTCACATGGTCATGAGTTCGAGTTCAGTGAGGTTTTTGTGCATCAGCTTATACATACCATTGAATTTGTGCTTGGAGCAGTGTCAAATACAGCCTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCACACTCAGAGTTGTCAAGCGTGTTCTACGACAAGGTTCTCGTTCTATCTGCGAGGTACGACAGCATTATAATCTTGATAGTAGGCATTATCGTTTTCATTTTCGCCACCATTGGCGTGCTGCTATTGATGGAGACCCTAAGTGCCTTCCTTCATGCATTGCGTCTTCACTGGGTAGAGTTCCAAAACAAGTTCTACGAGGGAGACGGGTACAAATTCCACCCTTTCTCGTTTGCATTGATCGATGAAGATGATGAATAA 2454 43.32 MGDTRRGCCPSMDLFRSEPMQLVQLIIPVESAHRSISYLGDLGLLQFKDLNAEKSPFQRTYAAQIKRCGEMARKLHFFKEQMLKAGLSSKSSVSQVDISIDDLELKLGELEGELVEINANSEKLQRSFNELVEYKLVLQKAGEFFRSAQSSAIVQQRESESRQVDGDSIEVPLLLEQESFVDQSKPFNLGFLSGLVPRVKSMAFERMLFRATRGNVFLKQAAIEDPVVDPISSEKVEKNVFVVFYSGERAKNKILKICEAFGANRYPFDEDFGKQSQMIDEVSGKLSDLKTTIDVGLLHRGNLLQTIGEHFENWNLMVRKEKSIYHILNMLSVDVTKKCLVAEGWGPVFATKQIQDALYRAASDSNSQVGPIFQVLLTTEVPPTYFQTNKFSSAFQEIVDAYGVAKYQEANPGVYTIITFPFLFAVMFGDWGHGICLLLATLYFILREKKLSSQKLGDITQMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFELFGRSAYACRSPDCSDSATAGLVKVGSTYSFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISFFNATFFRNSINVWFQFLPQIIFLNSLFGYLSLLIIIKWVTGSNADLYHVMIYMFLGPTDDLGENQLFPGQKNVQIVLLLLALIAVPWMLLPKPFLLKKQHEQRFQGDSYAPLPSADDSHELDSHHDSHGHEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSARYDSIIILIVGIIVFIFATIGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFALIDEDDE 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47262737 47274937 + Sed0006800.1 Sed04g3911 712514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3911 817 PIRSF ATP6V0A1 10 817 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Sed04g3911 817 PANTHER VACUOLAR PROTON ATPASES 12 815 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Sed04g3911 817 Pfam V-type ATPase 116kDa subunit family 38 809 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g3911 817 Coils Coil 93 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3911 Sed-Chr4:47262737 Sed05g2892 Sed-Chr5:39910454 2.60E-292 dispersed
Sed04g3911 Sed-Chr4:47262737 Sed04g3912 Sed-Chr4:47262737 0.00E+00 tandem
Sed03g1719 Sed-Chr3:11211976 Sed04g3911 Sed-Chr4:47262737 0.00E+00 wgd
Sed04g3911 Sed-Chr4:47262737 Sed05g2301 Sed-Chr5:35519962 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3911 K02154 - csv:101211364 1464.13