Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3912 ATGGGCGATACCCGACGCGGCTGCTGCCCATCCATGGATCTGTTCCGCTCCGAGCCGATGCAGCTTGTGCAGCTCATTATTCCCGTCGAGTCTGCGCATCGCTCCATCTCCTACCTCGGTGATCTCGGCCTTCTCCAGTTTAAAGATCTCAATGCCGAGAAAAGTCCATTCCAGCGTACATATGCTGCGCAGATTAAAAGATGTGGAGAGATGGCGCGCAAATTGCACTTTTTCAAGGAACAGATGTTGAAGGCTGGATTATCAAGCAAAAGCTCTGTCTCACAAGTTGATATCAGTATAGATGACCTTGAGCTCAAACTTGGTGAGCTTGAGGGTGAACTAGTTGAGATAAATGCTAATAGTGAGAAGCTACAGCGTTCCTTCAATGAACTTGTGGAGTACAAGCTTGTTCTGCAGAAGGCTGGTGAGTTTTTCAGGTCAGCGCAAAGCAGTGCCATAGTGCAGCAAAGAGAATCTGAATCACGACAAGTTGATGGAGATTCAATTGAAGTTCCATTGTTGTTGGAACAAGAATCATTTGTGGATCAGTCAAAGCCATTTAATTTGGGATTTCTCTCTGGTCTTGTTCCTCGGGTAAAATCAATGGCATTTGAGCGGATGCTATTTCGTGCTACCAGGGGTAATGTGTTTCTGAAGCAGGCTGCAATTGAGGATCCTGTTGTAGATCCTATTTCTAGCGAGAAGGTTGAGAAAAACGTGTTTGTTGTTTTTTACTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGTGAGGCATTTGGTGCTAACCGGTACCCTTTTGATGAGGACTTCGGGAAACAATCCCAAATGATCGATGAGGTTTCTGGAAAACTGTCTGATCTGAAGACTACAATAGACGTTGGGCTGCTGCACAGGGGTAATCTGTTGCAGACTATTGGAGAACATTTTGAAAATTGGAATCTCATGGTGAGGAAAGAAAAATCCATATACCATATCTTGAACATGCTTAGCGTTGATGTAACCAAAAAATGTCTGGTTGCCGAGGGGTGGGGTCCTGTTTTTGCAACAAAGCAGATTCAAGATGCACTCTACCGGGCAGCATCCGATTCCAACTCTCAAGTTGGACCAATTTTCCAGGTTTTATTAACTACAGAAGTGCCACCTACTTATTTTCAGACGAACAAATTCTCCTCTGCTTTTCAAGAAATTGTGGATGCATATGGGGTGGCGAAGTATCAAGAGGCAAATCCTGGTGTATACACCATTATCACGTTCCCATTTCTATTTGCTGTTATGTTTGGTGATTGGGGACATGGAATATGTCTGTTACTTGCAACACTGTATTTTATATTACGGGAAAAAAAACTTTCTTCTCAGAAGCTTGGAGATATCACTCAAATGGCCTTTGGTGGACGCTATGTCATTTTAATGATGTCACTATTTTCAATATACACGGGTCTGATCTATAATGAGTTCTTCTCGGTCCCATTTGAACTGTTTGGTCGCTCAGCATATGCATGTCGTAGTCCTGATTGCAGTGATTCTGCTACTGCGGGGTTGGTAAAAGTCGGCTCTACATATTCATTTGGCTTGGATCCTGTATGGCATGGCACTCGAAGTGAGCTTCCGTTCCTTAACTCTCTGAAAATGAAAATGTCGATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTTTTTCAATGCTACATTTTTCCGGAACAGCATCAATGTCTGGTTTCAGTTCCTGCCACAGATAATATTTCTGAACAGCCTTTTCGGCTATCTTTCCCTTCTCATCATCATAAAGTGGGTCACTGGTTCAAACGCTGATCTGTACCACGTAATGATATACATGTTTCTTGGCCCCACCGATGATCTGGGTGAAAATCAGCTTTTTCCTGGGCAGAAAAATGTTCAGATTGTGCTTCTCTTACTGGCCCTTATTGCCGTGCCATGGATGCTGCTTCCAAAGCCTTTTCTTTTGAAGAAACAGCACGAACAGAGGTTCCAAGGCGATTCTTATGCTCCACTTCCAAGTGCTGATGATTCCCATGAGTTGGACTCGCATCATGATTCACATGGTCATGAGTTCGAGTTCAGTGAGGTTTTTGTGCATCAGCTTATACATACCATTGAATTTGTGCTTGGAGCAGTGTCAAATACAGCCTCCTATCTTCGTCTATGGGCTTTAAGGGATTGGCTTAGTAGTCAACGAGAGTCATGGGGTTCCAGGTTATGGATTCAATCCATGATGACCACTTCCCTAAGAAATAATTTGGTATGGATTTTCTTGATATTCAAATATTCTAGATTTAGACGGTATATCTCTAGAGAATAG 2334 42.76 MGDTRRGCCPSMDLFRSEPMQLVQLIIPVESAHRSISYLGDLGLLQFKDLNAEKSPFQRTYAAQIKRCGEMARKLHFFKEQMLKAGLSSKSSVSQVDISIDDLELKLGELEGELVEINANSEKLQRSFNELVEYKLVLQKAGEFFRSAQSSAIVQQRESESRQVDGDSIEVPLLLEQESFVDQSKPFNLGFLSGLVPRVKSMAFERMLFRATRGNVFLKQAAIEDPVVDPISSEKVEKNVFVVFYSGERAKNKILKICEAFGANRYPFDEDFGKQSQMIDEVSGKLSDLKTTIDVGLLHRGNLLQTIGEHFENWNLMVRKEKSIYHILNMLSVDVTKKCLVAEGWGPVFATKQIQDALYRAASDSNSQVGPIFQVLLTTEVPPTYFQTNKFSSAFQEIVDAYGVAKYQEANPGVYTIITFPFLFAVMFGDWGHGICLLLATLYFILREKKLSSQKLGDITQMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFELFGRSAYACRSPDCSDSATAGLVKVGSTYSFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISFFNATFFRNSINVWFQFLPQIIFLNSLFGYLSLLIIIKWVTGSNADLYHVMIYMFLGPTDDLGENQLFPGQKNVQIVLLLLALIAVPWMLLPKPFLLKKQHEQRFQGDSYAPLPSADDSHELDSHHDSHGHEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALRDWLSSQRESWGSRLWIQSMMTTSLRNNLVWIFLIFKYSRFRRYISRE 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47262737 47274148 + Sed0006800.2 Sed04g3912 712515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3912 777 PIRSF ATP6V0A1 10 770 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Sed04g3912 777 PANTHER VACUOLAR PROTON ATPASES 12 765 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Sed04g3912 777 Pfam V-type ATPase 116kDa subunit family 38 729 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g3912 777 Coils Coil 93 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3912 Sed-Chr4:47262737 Sed05g2301 Sed-Chr5:35519962 0.00E+00 dispersed
Sed04g3911 Sed-Chr4:47262737 Sed04g3912 Sed-Chr4:47262737 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3912 K02154 - csv:101211364 1308.12