Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3913 ATGAGATTTCTAGGGTTTGGTTTGATTTTTGGTGTCTTGATTGTGGTTTTGTTGAATGGAGTGGAGGTCTGCAATGGAGGTAAAACAAGCAGGTTTTTGAGGAAGGTTGAGAAAACTGTGGATATGCCTCTTTATAGTGATGTTTTTGCTGTGCCTTCTGGTTATAATGCTCCTCAACAGGTTCATATTACACAAGGAGATCATGAAGGGAAGGCAGTGATTGTTTCATGGGTCACTCCAAACAAACCAGGATCAAATAAAGTATTGTATTGGAGTGATAAAAGCAAGCAAAAGAAAGAGGCCATTGGAAAAGTATATACTTATAAGTTCTACAATTACACTTCAGGCTACATTCACCACTGCACCATTGCAAACTTAAAGTACAACACCAAATACTACTATGAAGTAGGAATTGGATACTCTCCAAGAGCATTCTGGTTTTTCACTCCTCCAGAAGTCGGTCCCGATGTACCCTATACGTTTGGTGTCATAGGGGATCTTGGTCAGAGTTTTGATTCAAATATAACGTTGACACATTATGAACGAAGCCCACATAAAGGGCAAGCAGTGTTGTTTGTGGGGGATCTATCTTATGCTGATAATTATCCATTTCATGACAATGTAAGATGGGATACATGGGGGAGATTCACAGAGAGAAGCACTGCCTATCAGCCTTGGATTTGGACTGCAGGAAATCATGAAATTGATTATGTCCCAGAAATTGGTGAGACCGAACCTTTCAAGCCATATACTAACCGTTATCATGTTCCTTATAAAGCGTCCCAGAGCCCAGCTCCTTTTTGGTACTCAATCAAGAGAGGTCCTGCATACATCATAGTCTTGGCTTCATATTCAGCTTATGGTAAATACACTCCTCAATACAAATGGCTCGAAGCAGAGTTCCCAAAAGTTAATCGAAGCGAAACACCATGGTTGATTGTTCTGATGCATTCTCCATGGTACAACAGCTACAACTATCATTACATGGAAGGAGAATCTATGCGAGTGATGTATGAGCCGTGGTTTGTAACTTACAAAGTTGACGTCGTCTTTGCTGGCCATGTTCATGCCTATGAAAGATCTGAAAGGATTTCAAATATTGCTTACAACATCGTGAATGGCCGTTGTGTTCCTGTGAACGATCAATTTGCACCTGTATACATAACCATAGGTGATGGAGGAAACCTTGAAGGCCTAGCAACCAATATGTCGGAGCCACAGCCTGCATACTCAGCATATCGTGAAGCAAGCTTTGGCCATGCCATATTCGATATAAAGAACCGAACTCATGCATATTTCGGCTGGAACAGGAATCAAGATGGATATGCGGTTGAAGCCGATTCTCTTTGGTTTTTGAACAGACACTGGCACCCGGTGGACGAGTTGTTGAGTGAGCAGAAATGA 1404 41.6 MRFLGFGLIFGVLIVVLLNGVEVCNGGKTSRFLRKVEKTVDMPLYSDVFAVPSGYNAPQQVHITQGDHEGKAVIVSWVTPNKPGSNKVLYWSDKSKQKKEAIGKVYTYKFYNYTSGYIHHCTIANLKYNTKYYYEVGIGYSPRAFWFFTPPEVGPDVPYTFGVIGDLGQSFDSNITLTHYERSPHKGQAVLFVGDLSYADNYPFHDNVRWDTWGRFTERSTAYQPWIWTAGNHEIDYVPEIGETEPFKPYTNRYHVPYKASQSPAPFWYSIKRGPAYIIVLASYSAYGKYTPQYKWLEAEFPKVNRSETPWLIVLMHSPWYNSYNYHYMEGESMRVMYEPWFVTYKVDVVFAGHVHAYERSERISNIAYNIVNGRCVPVNDQFAPVYITIGDGGNLEGLATNMSEPQPAYSAYREASFGHAIFDIKNRTHAYFGWNRNQDGYAVEADSLWFLNRHWHPVDELLSEQK 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47277490 47281782 + Sed0024709.1 Sed04g3913 712516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3913 467 Gene3D - 57 153 - -
Sed04g3913 467 SUPERFAMILY Purple acid phosphatase, N-terminal domain 39 151 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Sed04g3913 467 Gene3D - 154 463 IPR029052 -
Sed04g3913 467 PANTHER ACID PHOSPHATASE RELATED 11 454 IPR039331 GO:0003993(InterPro)
Sed04g3913 467 SUPERFAMILY Metallo-dependent phosphatases 155 460 IPR029052 -
Sed04g3913 467 Pfam Iron/zinc purple acid phosphatase-like protein C 384 443 IPR025733 -
Sed04g3913 467 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 57 153 - -
Sed04g3913 467 Pfam Purple acid Phosphatase, N-terminal domain 58 139 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Sed04g3913 467 Pfam Calcineurin-like phosphoesterase 160 358 IPR004843 GO:0016787(InterPro)
Sed04g3913 467 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 154 462 - -
Sed04g3913 467 CDD MPP_PAPs 155 453 IPR041792 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3913 K22390 - - csv:101211612 891.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3913 Sed-Chr4:47277490 Sed10g0969 Sed-Chr10:7933984 7.60E-188 dispersed
Sed08g0645 Sed-Chr8:4477574 Sed04g3913 Sed-Chr4:47277490 6.00E-156 transposed
Sed03g1723 Sed-Chr3:11253979 Sed04g3913 Sed-Chr4:47277490 2.20E-198 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1026 . . . . . . . . . . . . . . Sed04g3913 . . Bhi04g00213 Tan02g0773 Cmetu01g2623 . Hepe02g0485 . . Cla08g01452 Cam08g1937 Cec08g1511 Cco08g1650 Clacu08g1627 . Cre08g1413 . . . . . . . . Blo17g00768 . . . . . . Bma05g00144 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97