Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3919 ATGAACAGTGCAGGGAACTATTTGGAGAGTCTCACTGTTCTTGAGAGGCAGAGGGGTGGTTTGAAATGGCAGCAAGATCAGCTTTTGCATCAGCAGCCAATGAGTCAGAGTTGTTTCAATAGGGTGGATTACGGCGGCGGATTTCCGCCGCCGGTGGCTGTTCCGGCGGATCACCTCACAAGGGTTCCAGGGTTCATGAGCGGTGGCGGTGGTGGGTTTTCACTTGTTGAGATGGTAATGGGGGCGGTGAAGCCTGACCCTGGTTTGGAAGATGGGTGGTCTTCAATGGACAAGTTTGATCCTTCTTTGTTGTTGAATGCCACTGCTTATGACCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCGGAGAAGATGGGGTCGGCGGTTGGAAGAGAGAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACCGCCAATAACAACAAGGTGACTGTGGATGAAGATAACAACAACAGCAACGATAAGAGAATCAAAACAAGTAATGAAGAAGGAGACTCATCTAAAACCACAGATCAAAACAGCACCAAAAACAACTCAACCACAACAAACAACAGAGAAACTTCAGCTGATACCTCTAAAGAAAACTCCAAAGCCTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCAGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTCCAAAGACAAGTAGAGTTCTTGTCCATGAAGTTAGCTACAGTCAATCCAAGGTTAGACTTCAATGCCGATGATCTATTCACCAAAGAGATATTTCCCCCTGTTTGCGCCACCGCAAACTTCCCGGCGATGGGCGGAATGTCATCGGAGACGACAGATCCTGCATGCTATTTACAATTCAATCCAAACAATCAACAAATGGTGCAGTGTTGTGGATCAGAAATGGGAATTAATACCTCGGATGTCGGTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAGTTTCCTCGATTCATCATGTCTCACCCAATTTCAACCCTCATCTGGGTGGGACGTGGATTTGCAGAATCTGTACAATGTGGATTCCGATCAAGGAAGATCATCGACTGCCTTTTCGTCTCAACCATTTACAGGCTCATTGGAAGGAAGCAATGTAAAGATGGAAATGTGA 1290 46.36 MNSAGNYLESLTVLERQRGGLKWQQDQLLHQQPMSQSCFNRVDYGGGFPPPVAVPADHLTRVPGFMSGGGGGFSLVEMVMGAVKPDPGLEDGWSSMDKFDPSLLLNATAYDLNSSLSRTSSCPPAVAEKMGSAVGRESFKKRKAEKVHNTANNNKVTVDEDNNNSNDKRIKTSNEEGDSSKTTDQNSTKNNSTTTNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNADDLFTKEIFPPVCATANFPAMGGMSSETTDPACYLQFNPNNQQMVQCCGSEMGINTSDVGLRRTISAPVSFPESFLDSSCLTQFQPSSGWDVDLQNLYNVDSDQGRSSTAFSSQPFTGSLEGSNVKMEM 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47315722 47320332 - Sed0008756.1 Sed04g3919 712522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3919 429 MobiDBLite consensus disorder prediction 161 178 - -
Sed04g3919 429 MobiDBLite consensus disorder prediction 115 217 - -
Sed04g3919 429 FunFam Basic helix-loop-helix transcription factor 225 297 - -
Sed04g3919 429 MobiDBLite consensus disorder prediction 134 149 - -
Sed04g3919 429 MobiDBLite consensus disorder prediction 179 202 - -
Sed04g3919 429 Pfam Helix-loop-helix DNA-binding domain 232 279 IPR011598 GO:0046983(InterPro)
Sed04g3919 429 CDD bHLH_AtBPE_like 218 303 - -
Sed04g3919 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 278 IPR011598 GO:0046983(InterPro)
Sed04g3919 429 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 133 345 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed04g3919 429 Gene3D - 225 298 IPR036638 GO:0046983(InterPro)
Sed04g3919 429 MobiDBLite consensus disorder prediction 203 217 - -
Sed04g3919 429 SMART finulus 234 284 IPR011598 GO:0046983(InterPro)
Sed04g3919 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 297 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0327 Sed-Chr2:39585589 Sed04g3919 Sed-Chr4:47315722 1.00E-35 dispersed
Sed04g3919 Sed-Chr4:47315722 Sed05g2313 Sed-Chr5:35584524 6.40E-133 dispersed
Sed04g3919 Sed-Chr4:47315722 Sed04g3920 Sed-Chr4:47316390 5.90E-211 tandem
Sed04g3919 Sed-Chr4:47315722 Sed05g2312 Sed-Chr5:35584524 1.60E-155 wgd
Sed04g3919 Sed-Chr4:47315722 Sed05g3618 Sed-Chr5:44510229 5.60E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38388 PF00010 HLH 1.20E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3919 - - - 0.0