Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3920 ATGAACAGTGCAGGGAACTATTTGGAGAGTCTCACTGTTCTTGAGAGGCAGAGGGGTGGTTTGAAATGGCAGCAAGATCAGCTTTTGCATCAGCAGCCAATGAGTCAGAGTTGTTTCAATAGGGTGGATTACGGCGGCGGATTTCCGCCGCCGGTGGCTGTTCCGGCGGATCACCTCACAAGGGTTCCAGGGTTCATGAGCGGTGGCGGTGGTGGGTTTTCACTTGTTGAGATGGTAATGGGGGCGGTGAAGCCTGACCCTGGTTTGGAAGATGGGTGGTCTTCAATGGACAAGTTTGATCCTTCTTTGTTGTTGAATGCCACTGCTTATGACCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCGGAGAAGATGGGGTCGGCGGTTGGAAGAGAGAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACCGCCAATAACAACAAGGTGACTGTGGATGAAGATAACAACAACAGCAACGATAAGAGAATCAAAACAAGTAATGAAGAAGGAGACTCATCTAAAACCACAGATCAAAACAGCACCAAAAACAACTCAACCACAACAAACAACAGAGAAACTTCAGCTGATACCTCTAAAGAAAACTCCAAAGCCTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCAGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTCCAAAGACAAGTAGAGTTCTTGTCCATGAAGTTAGCTACAGTCAATCCAAGGTTAGACTTCAATGCCGATGATCTATTCACCAAAGAGATATTTCCCCCTGTTTGCGCCACCGCAAACTTCCCGGCGATGGGCGGAATGTCATCGGAGACGACAGATCCTGCATGCTATTTACAATTCAATCCAAACAATCAACAAATGGTGCAGTGTTGTGGATCAGAAATGGGAATTAATACCTCGGATGTCGGTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAGTTTCCTCGATTCATCATGTCTCACCCAATTTCAACCCTCATCTGGGTGGGACGTGGATTTGCAGAATCTGTACAATGTGGATTCCGATCAAGGAAGATCATCGACTGCCTTTTCGTCTCAACCATTTACAGGTAAATATGGGATTGAAACTCTGTAA 1278 46.24 MNSAGNYLESLTVLERQRGGLKWQQDQLLHQQPMSQSCFNRVDYGGGFPPPVAVPADHLTRVPGFMSGGGGGFSLVEMVMGAVKPDPGLEDGWSSMDKFDPSLLLNATAYDLNSSLSRTSSCPPAVAEKMGSAVGRESFKKRKAEKVHNTANNNKVTVDEDNNNSNDKRIKTSNEEGDSSKTTDQNSTKNNSTTTNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNADDLFTKEIFPPVCATANFPAMGGMSSETTDPACYLQFNPNNQQMVQCCGSEMGINTSDVGLRRTISAPVSFPESFLDSSCLTQFQPSSGWDVDLQNLYNVDSDQGRSSTAFSSQPFTGKYGIETL 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47316390 47320332 - Sed0008756.2 Sed04g3920 712523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3920 425 MobiDBLite consensus disorder prediction 161 178 - -
Sed04g3920 425 MobiDBLite consensus disorder prediction 115 217 - -
Sed04g3920 425 Gene3D - 225 298 IPR036638 GO:0046983(InterPro)
Sed04g3920 425 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 133 345 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed04g3920 425 MobiDBLite consensus disorder prediction 134 149 - -
Sed04g3920 425 MobiDBLite consensus disorder prediction 179 202 - -
Sed04g3920 425 CDD bHLH_AtBPE_like 218 303 - -
Sed04g3920 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 278 IPR011598 GO:0046983(InterPro)
Sed04g3920 425 FunFam Basic helix-loop-helix transcription factor 225 297 - -
Sed04g3920 425 Pfam Helix-loop-helix DNA-binding domain 232 279 IPR011598 GO:0046983(InterPro)
Sed04g3920 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 297 IPR036638 GO:0046983(InterPro)
Sed04g3920 425 MobiDBLite consensus disorder prediction 203 217 - -
Sed04g3920 425 SMART finulus 234 284 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3920 Sed-Chr4:47316390 Sed05g2312 Sed-Chr5:35584524 1.20E-150 dispersed
Sed04g3919 Sed-Chr4:47315722 Sed04g3920 Sed-Chr4:47316390 5.90E-211 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38389 PF00010 HLH 1.20E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3920 - - - 0.0