Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g3920 | ATGAACAGTGCAGGGAACTATTTGGAGAGTCTCACTGTTCTTGAGAGGCAGAGGGGTGGTTTGAAATGGCAGCAAGATCAGCTTTTGCATCAGCAGCCAATGAGTCAGAGTTGTTTCAATAGGGTGGATTACGGCGGCGGATTTCCGCCGCCGGTGGCTGTTCCGGCGGATCACCTCACAAGGGTTCCAGGGTTCATGAGCGGTGGCGGTGGTGGGTTTTCACTTGTTGAGATGGTAATGGGGGCGGTGAAGCCTGACCCTGGTTTGGAAGATGGGTGGTCTTCAATGGACAAGTTTGATCCTTCTTTGTTGTTGAATGCCACTGCTTATGACCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCGGAGAAGATGGGGTCGGCGGTTGGAAGAGAGAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACCGCCAATAACAACAAGGTGACTGTGGATGAAGATAACAACAACAGCAACGATAAGAGAATCAAAACAAGTAATGAAGAAGGAGACTCATCTAAAACCACAGATCAAAACAGCACCAAAAACAACTCAACCACAACAAACAACAGAGAAACTTCAGCTGATACCTCTAAAGAAAACTCCAAAGCCTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCAGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTCCAAAGACAAGTAGAGTTCTTGTCCATGAAGTTAGCTACAGTCAATCCAAGGTTAGACTTCAATGCCGATGATCTATTCACCAAAGAGATATTTCCCCCTGTTTGCGCCACCGCAAACTTCCCGGCGATGGGCGGAATGTCATCGGAGACGACAGATCCTGCATGCTATTTACAATTCAATCCAAACAATCAACAAATGGTGCAGTGTTGTGGATCAGAAATGGGAATTAATACCTCGGATGTCGGTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAGTTTCCTCGATTCATCATGTCTCACCCAATTTCAACCCTCATCTGGGTGGGACGTGGATTTGCAGAATCTGTACAATGTGGATTCCGATCAAGGAAGATCATCGACTGCCTTTTCGTCTCAACCATTTACAGGTAAATATGGGATTGAAACTCTGTAA | 1278 | 46.24 | MNSAGNYLESLTVLERQRGGLKWQQDQLLHQQPMSQSCFNRVDYGGGFPPPVAVPADHLTRVPGFMSGGGGGFSLVEMVMGAVKPDPGLEDGWSSMDKFDPSLLLNATAYDLNSSLSRTSSCPPAVAEKMGSAVGRESFKKRKAEKVHNTANNNKVTVDEDNNNSNDKRIKTSNEEGDSSKTTDQNSTKNNSTTTNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNADDLFTKEIFPPVCATANFPAMGGMSSETTDPACYLQFNPNNQQMVQCCGSEMGINTSDVGLRRTISAPVSFPESFLDSSCLTQFQPSSGWDVDLQNLYNVDSDQGRSSTAFSSQPFTGKYGIETL | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 47316390 | 47320332 | - | Sed0008756.2 | Sed04g3920 | 712523 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g3920 | 425 | MobiDBLite | consensus disorder prediction | 161 | 178 | - | - | |
Sed04g3920 | 425 | MobiDBLite | consensus disorder prediction | 115 | 217 | - | - | |
Sed04g3920 | 425 | Gene3D | - | 225 | 298 | IPR036638 | GO:0046983(InterPro) | |
Sed04g3920 | 425 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 133 | 345 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Sed04g3920 | 425 | MobiDBLite | consensus disorder prediction | 134 | 149 | - | - | |
Sed04g3920 | 425 | MobiDBLite | consensus disorder prediction | 179 | 202 | - | - | |
Sed04g3920 | 425 | CDD | bHLH_AtBPE_like | 218 | 303 | - | - | |
Sed04g3920 | 425 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 228 | 278 | IPR011598 | GO:0046983(InterPro) | |
Sed04g3920 | 425 | FunFam | Basic helix-loop-helix transcription factor | 225 | 297 | - | - | |
Sed04g3920 | 425 | Pfam | Helix-loop-helix DNA-binding domain | 232 | 279 | IPR011598 | GO:0046983(InterPro) | |
Sed04g3920 | 425 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 226 | 297 | IPR036638 | GO:0046983(InterPro) | |
Sed04g3920 | 425 | MobiDBLite | consensus disorder prediction | 203 | 217 | - | - | |
Sed04g3920 | 425 | SMART | finulus | 234 | 284 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3920 | Sed-Chr4:47316390 | Sed05g2312 | Sed-Chr5:35584524 | 1.20E-150 | dispersed | |
Sed04g3919 | Sed-Chr4:47315722 | Sed04g3920 | Sed-Chr4:47316390 | 5.90E-211 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38389 | PF00010 | HLH | 1.20E-06 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g3920 | - | - | - | 0.0 |