Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3932 ATGTATTTAGTGTTGTGTAGCTTATCTCTATCATTGATTGATGTTCTCGTTCGAAAGTCTTTTAGTGTTAGTTGCTTTGCTGTGAAATATTTCACTTTGATATATGGAGTAATTTTATTTCCTTCCGCAGCTTTAGTTGTCATAGAGGTATTCACAGTATTGATTGAAAACTTGTTAGGAATCATGCCACAGAAATCATATTCCTTTATTCTGGCCGTCTCTGGACAAGCTCTGCAAGGTTCTCCCTTTCATGGTCTCCGGTCAAGTGCACACTTGTTCAGCACCAAATTAGAGGATGAAGAAAGAGAGCAGCTTGCCAAGGAGATCTCGAAGGATTGGAGTTCTATTTTTGAGCGTAGCATAAACACACTATTTCTCACTGAAATGGTTCGAGGTCTGATGCTCACTCTTAAATACTTCTTTGAGAAAAAAGTCACTATCAATTACCCATTCGAGAAAGGTCCACTAAGTCCTCGTTTTCGAGGTGAGCATGCCCTTCGGCGATATGCAACTGGAGAAGAAAGATGCATTGCATGCAAACTTTGTGAAGCTATTTGTCCTGCCCAAGCTATCACAATTGAAGCCGAGGAACGGGAAGATGGTAGCCGTAGGACTACAAGGTATGACATTGACATGACCAAATGCATCTACTGTGGATTCTGTCAAGAAGCATGCCCTGTTGACGCCATTGTTGAAGGACCCAACTTCGAGTTCGCCACGGAGACTCATGAGGAGCTTCTCTATGACAAAGAAAAGTTGCTCGAGAACGGAGACCGCTGGGAGACCGAGATTGCAGAGAACCTAAGATCTGAAAGCCTCTATCGTTGA 828 42.75 MYLVLCSLSLSLIDVLVRKSFSVSCFAVKYFTLIYGVILFPSAALVVIEVFTVLIENLLGIMPQKSYSFILAVSGQALQGSPFHGLRSSAHLFSTKLEDEEREQLAKEISKDWSSIFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYATGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47404074 47408290 - Sed0011539.2 Sed04g3932 712535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3932 275 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 176 187 IPR017900 -
Sed04g3932 275 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 215 226 IPR017900 -
Sed04g3932 275 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 167 196 IPR017896 -
Sed04g3932 275 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 108 275 IPR010226 GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0009060(PANTHER)|GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0032981(PANTHER)|GO:0045272(PANTHER)|GO:0051539(InterPro)
Sed04g3932 275 FunFam NADH-quinone oxidoreductase subunit I 1 149 272 - -
Sed04g3932 275 Pfam 4Fe-4S dicluster domain 175 229 IPR017896 -
Sed04g3932 275 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 123 259 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Sed04g3932 275 Gene3D - 149 274 - -
Sed04g3932 275 NCBIfam NADH-quinone oxidoreductase, chain I 132 253 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Sed04g3932 275 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 206 235 IPR017896 -
Sed04g3932 275 SUPERFAMILY 4Fe-4S ferredoxins 149 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3932 K03941 - - csv:101219679 395.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3931 Sed-Chr4:47404074 Sed04g3932 Sed-Chr4:47404074 3.80E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g591 . . . . . . . . Cmo19g00680 . . . . . Sed04g3932 Cpe04g00120 Cpe15g00540 Bhi05g01230 Tan02g0799 Cmetu01g2454 . Hepe02g0508 . . Cla02g00522 Cam02g0540 . Cco02g0547 Clacu02g0541 Cmu02g0536 Cre02g0867 Cone12ag1151 Cone8ag1201 . . . . . Cme01g01422 . . . . Bpe15g00868 . . . . . . . Cma19g00666 . Car19g00509 . . . . . . . . . . . . . . . . Lsi11g01103 . Chy01g00788 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010764 0 1 0 0 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32