Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3936 ATGGAGGAGAAATTGATTCAACGCCTCGAATCCGCCGTGTCTCGGCTTGAGGCACTGTCGTCCGGTGGCGGTGCTTCGTCGGAAATTTACGACAATGCCGCGTCGGAGGCGTCGATTTTGGCTTTTGAGGATCTGATGAGGAATTACGTACGGAAGGTTTCGGATGCTGGTGAGAAGATTGGAGGTCAGGTTCTCGAGGCTACGAGGATTGTGGAAGAAGCTTTTTCCGCTGAGAAGGAGCTTCTCGTCAAGGTCAAGCAAACGCAGAAACCAGATCTTGCCGGTTTGGCTGAATTTCTCAAGCCATTGAATGAAGTGATTCTGAAGGCAAACACACTGACAGCAGGGAAAAGATCCGAGTTCTTTAACCATTTGAAGACTGTTGCGGATGCTCTCTCCTCTTTAGCTTGGATTGCGTATACGGGCAAAGGGTGTGGTATGAGCATGCCCGTTGCATATGTTGAAGAAAATTGGCAAACGGCTGAGTTTTACTGTAACAAGATTCTCGTGGAGTTTAAAAGCAAAGATCAAAACCATGTCGAGTGGGCCAAAGCTCTGAAGGAACTATTCTTGCCAGGTTTGAAGGATTATGTTAAAAGTTTTTATCCTCTGGGACCAGTTTGGAATCCTGTTGGCAAAATGTGTACTCCAGCTGCTACTTCAACCAAAATTCCTGCCCCAAGTGCTTCTGCTCCGCCTCCTCCCTTGGCTCCTCTCTTTAGCGCTGAAACTTCTAAAGTGGCAGCACGACCAAAAGAAGGAATGGCTGCCGTGTTTCAAGAAATTAGCTCAGGAAAATCTGTAACTGAAGGTTTGAGAAAAGTTACTGATGACATGAAGACGAAAAACCGCGCAGAGAGAACTGGCATGGTCAATGCTAGTGAAGTAGTTCGTAAGAACGTGCCTTCTGTGTCAAAGTCAGCTGTTGCTCCCAATCCCAAGTTCGAACTCCAAATGGGTCGGAAGTGGGCCATTGAAAACCAAATTGGCAAAAAAGACTTGGTTATATCAGACTGTGATGCAAAACAATCGGTGTATATTTACGGATGTAAAAATTCTGTGTTGCAGGTTCAAGGAAAGGTCAATAACATAACAATTGACAAATGCAGTAAGACAGGAGTTGTATTCACTGATGTTGTGGCTGCATTTGAGGTTGTTAACTGCAATGGAATTGAGATTCAATGTCAGGGATCGGCTCCAACTATTTCGGTGGATAATACGAGTGGCTGCCAATTATATTTAAGCAGCGATTCTCTGAAGTCATCAATAACTACCGCCAAATCAAGTGAAATCAACGTTTTGGTGCGAGGAAGTGATCCAGATGGTGATTGGGTGGAACACGCTTTACCTGAGCAATTCGTTCACATACATAAGGATGGTCATTTTGAATCAACTCCAGTTTCTCATTCCGGTGCCTAA 1419 44.96 MEEKLIQRLESAVSRLEALSSGGGASSEIYDNAASEASILAFEDLMRNYVRKVSDAGEKIGGQVLEATRIVEEAFSAEKELLVKVKQTQKPDLAGLAEFLKPLNEVILKANTLTAGKRSEFFNHLKTVADALSSLAWIAYTGKGCGMSMPVAYVEENWQTAEFYCNKILVEFKSKDQNHVEWAKALKELFLPGLKDYVKSFYPLGPVWNPVGKMCTPAATSTKIPAPSASAPPPPLAPLFSAETSKVAARPKEGMAAVFQEISSGKSVTEGLRKVTDDMKTKNRAERTGMVNASEVVRKNVPSVSKSAVAPNPKFELQMGRKWAIENQIGKKDLVISDCDAKQSVYIYGCKNSVLQVQGKVNNITIDKCSKTGVVFTDVVAAFEVVNCNGIEIQCQGSAPTISVDNTSGCQLYLSSDSLKSSITTAKSSEINVLVRGSDPDGDWVEHALPEQFVHIHKDGHFESTPVSHSGA 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47443638 47447403 + Sed0027089.1 Sed04g3936 712539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3936 472 Gene3D - 312 471 IPR016098 -
Sed04g3936 472 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 2 470 IPR001837 GO:0003779(PANTHER)|GO:0003779(InterPro)|GO:0005737(PANTHER)|GO:0007010(InterPro)|GO:0007015(PANTHER)|GO:0008179(PANTHER)|GO:0019933(PANTHER)
Sed04g3936 472 FunFam Adenylyl cyclase-associated protein 311 471 - -
Sed04g3936 472 ProSiteProfiles C-CAP/cofactor C-like domain profile. 311 449 IPR017901 -
Sed04g3936 472 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 38 235 IPR036222 -
Sed04g3936 472 FunFam Adenylyl cyclase-associated protein 38 213 - -
Sed04g3936 472 Pfam CAP N-terminal conserved motif 3 27 IPR013992 GO:0003779(InterPro)|GO:0007010(InterPro)
Sed04g3936 472 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Sed04g3936 472 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 313 471 IPR036223 -
Sed04g3936 472 Pfam Adenylate cyclase associated (CAP) C terminal 312 469 IPR013912 GO:0003779(InterPro)|GO:0007010(InterPro)
Sed04g3936 472 Pfam CAP, N-terminal domain 42 203 IPR053950 -
Sed04g3936 472 SMART carp 350 387 IPR006599 -
Sed04g3936 472 SMART carp 388 425 IPR006599 -
Sed04g3936 472 Gene3D - 38 213 IPR036222 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3936 K17261 - - csv:101218960 751.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0307 Sed-Chr1:2343396 Sed04g3936 Sed-Chr4:47443638 6.50E-187 wgd
Sed04g3936 Sed-Chr4:47443638 Sed05g3627 Sed-Chr5:44580371 8.50E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g586 Blo02g00802 . . Bda08g00928 . . Bma05g00467 . Cmo19g00676 . Cma02g00403 . Car02g00263 Car20g00737 Sed04g3936 . Cpe15g00536 Bhi05g01226 Tan02g0805 Cmetu01g2256 . Hepe02g0512 . . Cla02g00526 Cam02g0544 Cec02g0545 Cco02g0551 Clacu02g0545 Cmu02g0540 Cre02g0871 . . Cone3ag1160 Cone10ag1168 Lsi10g00362 . Chy11g00386 Cme01g01427 . . . . . . . . Sed01g0307 Cmo02g00408 Cmo20g00863 . Cma19g00662 . Car19g00505 . Cpe05g01254 Bhi10g02018 Tan05g1316 Cmetu11g1598 . Hepe08g1021 . . . . . . . . . Lsi11g01099 Csa02g01251 Chy01g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002540 1 2 1 2 1 2 3 2 2 2 1 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59