Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3947 ATGGAAGTTAACAGTTCAAAATCCCACTTGCACAACCACAACCATTCCAATCTGCACCAAAACCAAAACCACCACAATGCCATTCTCAGCTCCAACTCCTTCCTCATCATCATTGCTTCCATAATCTCCATCACCATTTTCCTTGCCATTCTCCTCCTCCTCTTCATGCTCCACCGCCTCAAATCCCCTTCCAAACCCCCCGCTGCCACCGCCGCCGCCTCCCCGGCCACATTCATCCCCCACACAGCCATCCATTTTGACTCAAGCCCAGAAGTGAAAGGGGGGAGCTGCTTGTATGGAGGCAATTCAGGGAGGATTCCTCAGTACAGAATCAGGGGAGTTCAAGTTTTCACCTACAAGGAACTTGAATTGGCCACTGGTAGTTTCAGTGAAGCTAATGTCATTGGAAATGGAAGATTTGGGAGTGTGTACAGAGGAGTTCTTGGAGATGGAGCTTTGGTCGCTGTTAAAATGCTCCACAGAGATGGCAAGCAAAGGGAACGTGCTTTCAGAATGGAGGTGGATCTGCTAAGCCGCTTGCATTCTCCTTGTTTGGTGGAGTTGCTTGGCTACTGTGCTGACCAACATCATAGGCTTCTGATATTTGAATTTATGCACAATGGGACTCTTCATCATCATCTGCATAATCCCAACAGTGAATCTGGGCCATTGGATTGGAATACTAGATTAAGGATAGCCCTTGATTGTGCCAAGGCACTTGAGTTCCTCCATGAGCATGCAGTTCCATCTGTTATCCATAGAAACTTCAAGTGCACCAATGTTCTTCTAGATCAGGATTTTCGAGCCAAGGTGTCTGATTTTGGTTCGGCCAAGATGGGGTCGGATAAGATCAATGGTCAGATATCTACACAAGTACTTGGAACAACAGGATATCTTGCACCAGAGTATGCTTCAACAGGTAAACTTACTACAAAGTCAGATGTATACAGCTATGGTGTTGTGCTGCTAGAGCTTTTGACCGGTCGAGTGCCGGTCGATATCAAGCGACCACAGGGCCAGCATGTTCTTGTCTCATGGGCTCTCCCTAGGCTAATTAATAGAGAAAAAGTAGAGAAAATGATTGACCCAGCCATTCAAGGAAAATACTTAAAGAAGGATCTAGTTCAGGTAGCAGCCATTGCAGCCATGTGCGTGCAGCCCGAAGCCGACTACCGCCCTTTGATGACTGACGTTGTGCAGTCACTGGTTCCTCTAGTTAAGAACCCGTTGCCGCGTCGTCTCGATTCTTCAACCGACATTTCACTCCATCATAGTGAAAACTAG 1284 47.12 MEVNSSKSHLHNHNHSNLHQNQNHHNAILSSNSFLIIIASIISITIFLAILLLLFMLHRLKSPSKPPAATAAASPATFIPHTAIHFDSSPEVKGGSCLYGGNSGRIPQYRIRGVQVFTYKELELATGSFSEANVIGNGRFGSVYRGVLGDGALVAVKMLHRDGKQRERAFRMEVDLLSRLHSPCLVELLGYCADQHHRLLIFEFMHNGTLHHHLHNPNSESGPLDWNTRLRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDFRAKVSDFGSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGQHVLVSWALPRLINREKVEKMIDPAIQGKYLKKDLVQVAAIAAMCVQPEADYRPLMTDVVQSLVPLVKNPLPRRLDSSTDISLHHSEN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47510153 47513284 - Sed0020707.1 Sed04g3947 712550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3947 427 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 106 204 - -
Sed04g3947 427 PANTHER OS01G0750732 PROTEIN 13 412 IPR050885 -
Sed04g3947 427 SUPERFAMILY Protein kinase-like (PK-like) 107 402 IPR011009 -
Sed04g3947 427 ProSiteProfiles Protein kinase domain profile. 129 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3947 427 Gene3D Transferase(Phosphotransferase) domain 1 205 415 - -
Sed04g3947 427 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524(InterPro)
Sed04g3947 427 Gene3D Phosphorylase Kinase; domain 1 102 204 - -
Sed04g3947 427 CDD STKc_IRAK 135 405 - -
Sed04g3947 427 FunFam Receptor-like serine/threonine-protein kinase ALE2 205 422 - -
Sed04g3947 427 Pfam Protein tyrosine and serine/threonine kinase 133 402 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3947 Sed-Chr4:47510153 Sed05g1911 Sed-Chr5:32475863 9.00E-111 dispersed
Sed08g2224 Sed-Chr8:35954674 Sed04g3947 Sed-Chr4:47510153 1.40E-32 dispersed
Sed04g3947 Sed-Chr4:47510153 Sed04g3948 Sed-Chr4:47510153 1.00E-186 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79109 PF07714 PK_Tyr_Ser-Thr 3.10E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3947 - - - 0.0