Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3948 ATGGAAGTTAACAGTTCAAAATCCCACTTGCACAACCACAACCATTCCAATCTGCACCAAAACCAAAACCACCACAATGCCATTCTCAGCTCCAACTCCTTCCTCATCATCATTGCTTCCATAATCTCCATCACCATTTTCCTTGCCATTCTCCTCCTCCTCTTCATGCTCCACCGCCTCAAATCCCCTTCCAAACCCCCCGCTGCCACCGCCGCCGCCTCCCCGGCCACATTCATCCCCCACACAGCCATCCATTTTGACTCAAGCCCAGAAGTGAAAGGGGGGAGCTGCTTGTATGGAGGCAATTCAGGGAGGATTCCTCAGTACAGAATCAGGGGAGTTCAAGTTTTCACCTACAAGGAACTTGAATTGGCCACTGGTAGTTTCAGTGAAGCTAATGTCATTGGAAATGGAAGATTTGGGAGTGTGTACAGAGGAGTTCTTGGAGATGGAGCTTTGGTCGCTGTTAAAATGCTCCACAGAGATGGCAAGCAAAGGGAACGTGCTTTCAGAATGGAGGTGGATCTGCTAAGCCGCTTGCATTCTCCTTGTTTGGTGGAGTTGCTTGGCTACTGTGCTGACCAACATCATAGGCTTCTGATATTTGAATTTATGCACAATGGGACTCTTCATCATCATCTGCATAATCCCAACAGTGAATCTGGGCCATTGGATTGGAATACTAGATTAAGGATAGCCCTTGATTGTGCCAAGGCACTTGAGTTCCTCCATGAGCATGCAGTTCCATCTGTTATCCATAGAAACTTCAAGTGCACCAATGTTCTTCTAGATCAGGATTTTCGAGCCAAGGTGTCTGATTTTGGTTCGGCCAAGATGGGGTCGGATAAGATCAATGGTCAGATATCTACACAAGTACTTGGAACAACAGGATATCTTGCACCAGAGTATGCTTCAACAGGTAAACTTACTACAAAGTCAGATGTATACAGCTATGGTGTTGTGCTGCTAGAGCTTTTGACCGGTCGAGTGCCGGTCGATATCAAGCGACCACAGGGCCAGCATGTTCTTGTCTCATGGGTTAGTTAG 1047 47.09 MEVNSSKSHLHNHNHSNLHQNQNHHNAILSSNSFLIIIASIISITIFLAILLLLFMLHRLKSPSKPPAATAAASPATFIPHTAIHFDSSPEVKGGSCLYGGNSGRIPQYRIRGVQVFTYKELELATGSFSEANVIGNGRFGSVYRGVLGDGALVAVKMLHRDGKQRERAFRMEVDLLSRLHSPCLVELLGYCADQHHRLLIFEFMHNGTLHHHLHNPNSESGPLDWNTRLRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDFRAKVSDFGSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGQHVLVSWVS 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47510153 47513284 - Sed0020707.2 Sed04g3948 712551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3948 348 ProSiteProfiles Protein kinase domain profile. 129 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3948 348 Pfam Protein kinase domain 131 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g3948 348 PIRSF TyrPK_CSF1-R 129 221 - -
Sed04g3948 348 PIRSF TyrPK_CSF1-R 4 65 - -
Sed04g3948 348 PIRSF TyrPK_CSF1-R 211 332 - -
Sed04g3948 348 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 205 348 - -
Sed04g3948 348 SUPERFAMILY Protein kinase-like (PK-like) 107 343 IPR011009 -
Sed04g3948 348 PANTHER OS01G0750732 PROTEIN 13 346 IPR050885 -
Sed04g3948 348 FunFam serine/threonine-protein kinase PBS1-like 104 204 - -
Sed04g3948 348 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524(InterPro)
Sed04g3948 348 Gene3D Phosphorylase Kinase; domain 1 102 204 - -
Sed04g3948 348 Gene3D Transferase(Phosphotransferase) domain 1 205 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3948 Sed-Chr4:47510153 Sed05g1911 Sed-Chr5:32475863 7.60E-84 dispersed
Sed08g2225 Sed-Chr8:35954674 Sed04g3948 Sed-Chr4:47510153 1.50E-25 dispersed
Sed04g3947 Sed-Chr4:47510153 Sed04g3948 Sed-Chr4:47510153 1.00E-186 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79110 PF07714 PK_Tyr_Ser-Thr 4.00E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3948 - - - 0.0