Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3957 ATGGATCAGCAAGGGCATGGTCAGCCTCCATCCATGGGAGTGGTTGGCAGTGGAGGTCATATAGCATATGGTAGCAACCTGTACAATCCAAACCAAATGACTGTAGGCCCGACTTCCGGATCTGTTGTTACATCGGTCGGAGGTATTCAGTCTCCGGGTCACCCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAGCAACTTCAACAACAGCTCCAGGCTTTTTGGACAAATCAACACCAAGATATTGAGAAGGTAACTGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCCGACGAGGACGTACGAATGATATCAGCTGAGGCACCGGTTTTATTTGCTAGGGCATGTGAAATGTTCATCTTGGAATTGACTTTACGGTCTTGGAATCATACTGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCAGCAGCTATCACAAGAACTGACATTTTTGACTTTTTGGTTGATATTGTGCCAAGGGAGGATCTGAAAGACGAAGTACTCACATCAATTCCTAGAGGACCAATAACAGTTGGAGGACCTGGAGATGCAGTTCCTTATTGTTATATGCCCGCTTCGCATGCACCTCAGGTCGGAGCACCCGGAATGATCATGGGTAAGCCCATGATGGACCCGGCTATGTATGCTCAGCAATCGCATCCTTACATGCCGCAGCAAATGTGGCAGAACACACAAGATCAAGCCCCTCCCGATCAATAG 783 47.13 MDQQGHGQPPSMGVVGSGGHIAYGSNLYNPNQMTVGPTSGSVVTSVGGIQSPGHPGGAQLAQHQLAYQHIHQQQQQQLQQQLQAFWTNQHQDIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGPITVGGPGDAVPYCYMPASHAPQVGAPGMIMGKPMMDPAMYAQQSHPYMPQQMWQNTQDQAPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47555262 47558519 + Sed0026209.4 Sed04g3957 712560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3957 260 Pfam Core histone H2A/H2B/H3/H4 69 166 IPR007125 GO:0003677(InterPro)
Sed04g3957 260 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Sed04g3957 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982(InterPro)
Sed04g3957 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 77 198 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed04g3957 260 SUPERFAMILY Histone-fold 71 175 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3955 Sed-Chr4:47555262 Sed04g3957 Sed-Chr4:47555262 4.90E-144 dispersed
Sed04g3957 Sed-Chr4:47555262 Sed10g1805 Sed-Chr10:35109340 1.40E-58 dispersed
Sed04g3956 Sed-Chr4:47555262 Sed04g3957 Sed-Chr4:47555262 4.90E-144 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38399 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3957 K08066 - csv:101209664 421.394