Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3966 ATGTCCAAAATGTCAGGGTGTTCTGATGATGGTGAGAAATTAGGGAATGAATTCAGCCATGGAAGCTCTCAATCTCATCAGATCATTTCAGTCCCAAAGAAGAAAAGGAACTTACCGGGAACACCAGGCCCAGATGCTGAAGTGGTAGCGCTATCTCCAGAAACCCTAATGGCGAAAAATAGGTTTGTTTGTGAAATATGTAACAAGGGATTTCAGAGAGACCAGAACTTGCAGCTGCATAGGCGAGGGCACAACCTGCCGTGGAAGTTGAAGCAGCGAACGAGCGGGAGCGAGACGAAGAGGAGGGTGTACGTGTGCCCCGAAACATCGTGCGTCCACCACAATCCCGCGAGAGCCCTCGGAGACCTCACCGGAATCAAGAAGCATTTTAGTAGAAAACATGGGGAGAAGAAGTGGAAATGTGAGAAATGCTCAAAGAAGTATGCAGTTCAATCCGACTTGAAAGCTCACTCCAAAACCTGTGGCTCCAAAGAATACAAATGCGACTGTGGCACAATCTTTTCCAGGAGAGATAGCTTCATCACTCACAGAGCATTCTGCGATGCCTTAGCAGAAGAAAACAGCAAAATGGCTTCCTTTCAACCTGCCCTTCCCCACCACCTCATGCCAATCCCTCCCAACCCCTTCAACCTCTCTGCTCGATCCATGTTTTCGTCTTCCCTTCCCGACAACTCCGCCCCGTCCCATCGATCAAACGACCTCCATTTTCCCTCCTCCTCACTCACGTCCGCCACCGCCCTTCTACAGAAAGCGGCACAGATGGGAGCTGTACTGAGTTCGCCTATCATCCATCATAAGAACGGTTTCATTACGACAATGGCTCCTTCTTCCTTCGGTGGGCTGTTGCCTTCTAATGGGGGAGTAGAGATGATCGACGACATTTCGATGTCGAACGAGATGTTCGAGGCTGCAAGGAAGAGGATGACACTGAATTTGTTGGGGGCCGAGGGAGGAAAAGGGAGGAACTTTCAAGTACAAGAAAGTGTAGGATTTGGAGGGCTTATGGAGAATATGAGTTATTTTCACCAACAAGGGGCCATGGGAGGAAGGCACACATGGGACACTTGA 1089 49.49 MSKMSGCSDDGEKLGNEFSHGSSQSHQIISVPKKKRNLPGTPGPDAEVVALSPETLMAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETKRRVYVCPETSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALAEENSKMASFQPALPHHLMPIPPNPFNLSARSMFSSSLPDNSAPSHRSNDLHFPSSSLTSATALLQKAAQMGAVLSSPIIHHKNGFITTMAPSSFGGLLPSNGGVEMIDDISMSNEMFEAARKRMTLNLLGAEGGKGRNFQVQESVGFGGLMENMSYFHQQGAMGGRHTWDT 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47585521 47591794 + Sed0001971.1 Sed04g3966 712569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3966 362 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 138 162 - -
Sed04g3966 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Sed04g3966 362 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 274 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g3966 362 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 199 - -
Sed04g3966 362 MobiDBLite consensus disorder prediction 1 44 - -
Sed04g3966 362 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Sed04g3966 362 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 100 134 - -
Sed04g3966 362 SMART c2h2final6 62 84 IPR013087 -
Sed04g3966 362 SMART c2h2final6 104 134 IPR013087 -
Sed04g3966 362 SMART c2h2final6 139 159 IPR013087 -
Sed04g3966 362 MobiDBLite consensus disorder prediction 17 31 - -
Sed04g3966 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 167 IPR013087 -
Sed04g3966 362 Gene3D Classic Zinc Finger 117 197 - -
Sed04g3966 362 FunFam protein indeterminate-domain 12-like 41 110 - -
Sed04g3966 362 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Sed04g3966 362 Gene3D Classic Zinc Finger 44 112 - -
Sed04g3966 362 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Sed04g3966 362 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3966 Sed-Chr4:47585521 Sed09g1680 Sed-Chr9:40159673 7.90E-84 dispersed
Sed04g3966 Sed-Chr4:47585521 Sed06g2222 Sed-Chr6:45918264 7.20E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38401 PF00096 zf-C2H2 0.0034 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3966 - - - 0.0