Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g3998 ATGAGTAACAAAGAGGATGATGCTCAGAACAAGAGAAGGTACGCCATCATCGGCATCTCGTCCATGTTACTGGTGGCCATGGTGTTAGCGGTGACGCTCGGGGTTAACCTAAACGAGGATAAGGGCACTGGAAACAAGTCACCTGAAATAGCTTCTTCTATGAAAGCCATCAAAGCCATGTGTTCAAGTACCGATTACAAACAAGAATGTGTTGCTAGCCTTAAGTCTGCTGGCAACAAATCTTCCGACCCTCAAGAATTGGTTAAAGCTGGCTTTAAGGCTGCCATCAAATACATCCAAGCCGCTGCTAAGAAATCTGTCACCTTGAAAGAGCTCGAGAAAGATCCTAGAGCTACCCAAGCCCTTGCTGGCTGCAAGGAGCTCATGGATTTTGCGGTCGACGAGCTTAAATTCTCCATGAAAAAGCTTGGCGAGTTCGATATTACGGATGTCGACGAAATGCTGATCGATTTGAAGATTTGGCTCAGCGCCACCATTACTTACCAGGAAACTTGTTTGGATGGGTTCGAGAACACAACAGGTAACGCGGCGGCGAAGATGAAGAAGGCATTGAAGACGTCGATGCATTTGAGCAGCAATGGATTGGCGATGGTGTCCGAACTGTCCTCCATGTTGTCGGATTTTCAAATTCCAGGGATCAGTCGAAGACTTCTCGAGGTTCCGGCGGTAGGGCAGGACGATTTCCCGGAGTGGGCAAACCCAGGGATGAGGCGTCTCCTTACAGTATCTCAAAAGAAGGTGAAGGTGGACACTGTGGTGGCTCAGGATGGAAGTGGGGATTATAGGACCATTCAAGAGGCTATGGACAGAGTTCCAAAGAGGAAGAACAATCGAACTTATGTGATTCATATCAAGAAAGGAGTGTACAAGGAATACCTTATTGTGAACAAAACCCTCAGTCATGTCATGTTCATGGGTGATGGCGCCAAAAAGACCATTATCTCTGGAAGCAAGAACTTCATTGACGGCATACCCACCTTCAAAACCGCAACGGTGAACACTGCAGGACCGCACAAGCACCAAGCAGTGGCACTGCGAGTCCAAGCGGACAAGGTGGTATTCTACAACTGCGAGATGCACGGGTACCAAGACACCCTGTACGTGCACACCCTGCGTCAGTTCTACCGCGATTGCACCATCACTGGAACGATCGACTTCGTGTTCGGGGATGCAGCGGCCGTGTTCCAAAACTGCAACTTCCTGATACGCAGGCCCCTGCCAAACCAACAGACGATTGTGACAGCCCACGGGCGAAAGGAGAGGCGGCAGCCGTCAGCCCTGATCATCCAAGGGTCGGCGTTCAAGCCGGACGTGGACCTGAAGCCAGTGAAGAAGGAATACAAGAACTTCTTGGGTCGGCCGTGGAAAGAGTATTCGAGGACAATCATAATGGACTCGTACATTGATGACATCATTGCGCCGGAAGGGTGGCTGCCATGGAATGGGGATTGGGGTTTGAAGACATGTTTTTACACAGAGTTCAACAACTACGGGCCGGGATCCAAAAAGGACAAGAGGGTGAAATGGAGGGGAGTTAAGACCATCACGCCGCAACATGCAGTTGACTTCACGCCGGGAAGGTTCGTTTTGGGGGACAGATGGATTAAGCCCACCGGAGTGCCGTACGTCTCTGGGATGACCAAGTCCCATTCATAA 1677 50.21 MSNKEDDAQNKRRYAIIGISSMLLVAMVLAVTLGVNLNEDKGTGNKSPEIASSMKAIKAMCSSTDYKQECVASLKSAGNKSSDPQELVKAGFKAAIKYIQAAAKKSVTLKELEKDPRATQALAGCKELMDFAVDELKFSMKKLGEFDITDVDEMLIDLKIWLSATITYQETCLDGFENTTGNAAAKMKKALKTSMHLSSNGLAMVSELSSMLSDFQIPGISRRLLEVPAVGQDDFPEWANPGMRRLLTVSQKKVKVDTVVAQDGSGDYRTIQEAMDRVPKRKNNRTYVIHIKKGVYKEYLIVNKTLSHVMFMGDGAKKTIISGSKNFIDGIPTFKTATVNTAGPHKHQAVALRVQADKVVFYNCEMHGYQDTLYVHTLRQFYRDCTITGTIDFVFGDAAAVFQNCNFLIRRPLPNQQTIVTAHGRKERRQPSALIIQGSAFKPDVDLKPVKKEYKNFLGRPWKEYSRTIIMDSYIDDIIAPEGWLPWNGDWGLKTCFYTEFNNYGPGSKKDKRVKWRGVKTITPQHAVDFTPGRFVLGDRWIKPTGVPYVSGMTKSHS 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47705999 47707807 - Sed0020227.1 Sed04g3998 712601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g3998 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 209 IPR035513 -
Sed04g3998 558 PANTHER PECTINESTERASE 13 544 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed04g3998 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 209 IPR035513 -
Sed04g3998 558 Pfam Pectinesterase 257 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed04g3998 558 FunFam Pectinesterase 53 209 - -
Sed04g3998 558 Gene3D - 251 553 IPR012334 -
Sed04g3998 558 Pfam Plant invertase/pectin methylesterase inhibitor 55 204 IPR006501 GO:0004857(InterPro)
Sed04g3998 558 SMART PMEI_2 52 204 IPR006501 GO:0004857(InterPro)
Sed04g3998 558 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Sed04g3998 558 NCBIfam pectinesterase inhibitor domain 53 208 IPR006501 GO:0004857(InterPro)
Sed04g3998 558 CDD PMEI-like_3 59 210 - -
Sed04g3998 558 SUPERFAMILY Pectin lyase-like 255 552 IPR011050 -
Sed04g3998 558 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Sed04g3998 558 FunFam Pectinesterase 251 553 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0443 Sed-Chr4:3273430 Sed04g3998 Sed-Chr4:47705999 1.30E-237 dispersed
Sed04g3998 Sed-Chr4:47705999 Sed09g0254 Sed-Chr9:2032683 2.80E-173 dispersed
Sed04g0442 Sed-Chr4:3267928 Sed04g3998 Sed-Chr4:47705999 3.40E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g3998 K01051 - csv:101207393 895.19