Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g4023 ATGGATTCAGAAGGAGAGCAGCAGCAGGAGGTGTTGAAATGGGATAGAGCAGCAGCAGGAAGTGGAATGGTGCGGGGTGCCTGCAGGCCGGAGTTGGGAGGGCTGGAGGAGTTGTTCCAGGCTTACGGGATCAGGTACTACACGGCGGCCAAAATAGCTGAGCTGGGATTCACGGTCAGCACCCTGGTGGACATGAAAGAGGAAGAGTTGGAGGAGATGATGAACAGCCTCTCACACATTTTCCGCTGGAAGCTTCTGGTGGGGGAGAGATACGGAATAAAGGCTGCTGTAAGAGCCGAGCGAAGGCGTGTCATCATGTTGTCCACCAACAACGACACAGCCACCACTACAAACCACCACCAGCACCACCTGGTGGATGCCCTTTCTCAGGAAGGCCTATCGTCCGAATTAGAGCCTCCACCGCAGCAGCAGCGGATCAGGAGATCAACAAAGAAGAAGAAACTGCAGCAGCAGCAGCACACAGAGCTGGAGGATCAGGATGAATTAAGCTCAGAGGATATTACCACTATTATGGAAGTGAGCTGTGAGCTGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGAAAGAAGAACGGCCTCGACTATCTCTTCCATCTCTATGACCAGTGTCTTGATTTTTTGATCCAGGTCCAGAACATCGCCAAGGACCGAGGAGAAAAATGTCCCACTAAGGTGACGAACCAGGTATTTAGATATGCTAAGAAGGCGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTATGTGCACTGCTATGCACTGCATTGTCTGGACGAGGAAGGGTCCAACGCATTGAGGATGGTTTTCAAAGAGAAAGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAACCCCTCGTAGCCATAGCTGCTACCCAGGGTTGGGACATTGATGCCATCTTCAATGCACATCCACGCCTTGCCATTTGGTATGTGCCCACCAAACTCCGCCAACTCTGCCACGCTCAACGCAACACTGCCACACCCTCCACCTCCAACTCTGCCCCCACCCACTTGCCATTTTAA 1074 52.33 MDSEGEQQQEVLKWDRAAAGSGMVRGACRPELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKEEELEEMMNSLSHIFRWKLLVGERYGIKAAVRAERRRVIMLSTNNDTATTTNHHQHHLVDALSQEGLSSELEPPPQQQRIRRSTKKKKLQQQQHTELEDQDELSSEDITTIMEVSCELRQREHPFIVTEPGEVARGKKNGLDYLFHLYDQCLDFLIQVQNIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEGSNALRMVFKEKGENVGAWRQACYKPLVAIAATQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAQRNTATPSTSNSAPTHLPF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47893003 47895211 - Sed0007314.1 Sed04g4023 712626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g4023 357 MobiDBLite consensus disorder prediction 132 170 - -
Sed04g4023 357 PANTHER PROTEIN LEAFY 25 350 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed04g4023 357 Pfam Floricaula / Leafy protein SAM domain 31 104 IPR035079 -
Sed04g4023 357 Gene3D Protein LEAFY 182 350 IPR038276 -
Sed04g4023 357 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 182 344 IPR035209 GO:0003677(InterPro)
Sed04g4023 357 Coils Coil 146 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g4023 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g4023 . 32 343 Orphan Transcription Factor Family AT5G61850 71.3 6.2e-112 402.1
Sed09g0407 . 1 169 Orphan Transcription Factor Family AT1G06040 67.8 6.1e-61 231.5
Sed13g0634 . 1 109 Orphan Transcription Factor Family AT1G06040 67.0 5.5e-38 155.2
Sed04g1531 . 1 109 Orphan Transcription Factor Family AT1G06040 67.0 3.6e-37 152.5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38408 PF17538 C_LFY_FLO 3.90E-104 CL0123 Sed TF