Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g4023 ATGGATTCAGAAGGAGAGCAGCAGCAGGAGGTGTTGAAATGGGATAGAGCAGCAGCAGGAAGTGGAATGGTGCGGGGTGCCTGCAGGCCGGAGTTGGGAGGGCTGGAGGAGTTGTTCCAGGCTTACGGGATCAGGTACTACACGGCGGCCAAAATAGCTGAGCTGGGATTCACGGTCAGCACCCTGGTGGACATGAAAGAGGAAGAGTTGGAGGAGATGATGAACAGCCTCTCACACATTTTCCGCTGGAAGCTTCTGGTGGGGGAGAGATACGGAATAAAGGCTGCTGTAAGAGCCGAGCGAAGGCGTGTCATCATGTTGTCCACCAACAACGACACAGCCACCACTACAAACCACCACCAGCACCACCTGGTGGATGCCCTTTCTCAGGAAGGCCTATCGTCCGAATTAGAGCCTCCACCGCAGCAGCAGCGGATCAGGAGATCAACAAAGAAGAAGAAACTGCAGCAGCAGCAGCACACAGAGCTGGAGGATCAGGATGAATTAAGCTCAGAGGATATTACCACTATTATGGAAGTGAGCTGTGAGCTGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGAAAGAAGAACGGCCTCGACTATCTCTTCCATCTCTATGACCAGTGTCTTGATTTTTTGATCCAGGTCCAGAACATCGCCAAGGACCGAGGAGAAAAATGTCCCACTAAGGTGACGAACCAGGTATTTAGATATGCTAAGAAGGCGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTATGTGCACTGCTATGCACTGCATTGTCTGGACGAGGAAGGGTCCAACGCATTGAGGATGGTTTTCAAAGAGAAAGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAACCCCTCGTAGCCATAGCTGCTACCCAGGGTTGGGACATTGATGCCATCTTCAATGCACATCCACGCCTTGCCATTTGGTATGTGCCCACCAAACTCCGCCAACTCTGCCACGCTCAACGCAACACTGCCACACCCTCCACCTCCAACTCTGCCCCCACCCACTTGCCATTTTAA 1074 52.33 MDSEGEQQQEVLKWDRAAAGSGMVRGACRPELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKEEELEEMMNSLSHIFRWKLLVGERYGIKAAVRAERRRVIMLSTNNDTATTTNHHQHHLVDALSQEGLSSELEPPPQQQRIRRSTKKKKLQQQQHTELEDQDELSSEDITTIMEVSCELRQREHPFIVTEPGEVARGKKNGLDYLFHLYDQCLDFLIQVQNIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEGSNALRMVFKEKGENVGAWRQACYKPLVAIAATQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAQRNTATPSTSNSAPTHLPF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47893003 47895211 - Sed0007314.1 Sed04g4023 712626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g4023 357 MobiDBLite consensus disorder prediction 132 170 - -
Sed04g4023 357 PANTHER PROTEIN LEAFY 25 350 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed04g4023 357 Pfam Floricaula / Leafy protein SAM domain 31 104 IPR035079 -
Sed04g4023 357 Gene3D Protein LEAFY 182 350 IPR038276 -
Sed04g4023 357 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 182 344 IPR035209 GO:0003677(InterPro)
Sed04g4023 357 Coils Coil 146 166 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38408 PF17538 C_LFY_FLO 3.90E-104 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g4023 - - - 0.0