Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0014 ATGCGAGTTTCCTATCACTCTGTTCATCAACCTAAATGTGGAGTCTGCCATAAGCACTGCAAATCATTTGAATCGCTGAGGGAGCATCTAAAGGGTCCGCTTTCAAAATCAAGTTGTTCAAAAATCTTCCTGGAGCAAGGCTGTGGCCTTTGTTTGAGAGTACTTGACGGTAGCACATCTCTCGGTGAGCACCAAGACATTTGCCAACTAACTGCACCTGTTCACCAAGGAACAAGTCTATTACCAACTGATTTATCAGATTGCTTTGATGAAGACCGTTCTGATCGAGGCCCTGGAGCAATAGCTATGGACTGTGTAATGGCTGGTGGTGGGAACGATGGCACCTTGGACCTTTGTGTTAGGATCTGCATTGTTGACCAAGATGAGAAATTGATTTTCAATACTTTTGTACAACCACTAGTACCAATCACGAATTATAGGAGTGAAGTAACTGGGCTAACGGAAGAATTTATGAGGTATGCCATGCCTCTGAAAGAAGTCCAAGAAAAAGTATTAAAGATCTTGCTAAATGGAGAATCCATTGGGAGATTGAGATTAAATGGCGGCAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCACATGTTAAGGGACACTGCTAGATATCATCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAACATATCTGGGGTATGATATTCGACAGGGTATGCATGACCCCTATGAAAATTGTGTATCAGTGATGCGATTGTACAAGAGAATGCGTAGTCTTGATCATCTTGGAGAAGTTGTGTCATCGTCAATTGCTCCTGTTGCTCACAATCTTGATTCCTATAGTGCAAAAGATCTTGAGAAGATGACTCCGGACAAACTTTATGAGATATCGAGATCAAACTTCAAGTGTTGGTGTGTTGACTCAAGACAAGTAATGCAGAGTTAA 978 41.51 MRVSYHSVHQPKCGVCHKHCKSFESLREHLKGPLSKSSCSKIFLEQGCGLCLRVLDGSTSLGEHQDICQLTAPVHQGTSLLPTDLSDCFDEDRSDRGPGAIAMDCVMAGGGNDGTLDLCVRICIVDQDEKLIFNTFVQPLVPITNYRSEVTGLTEEFMRYAMPLKEVQEKVLKILLNGESIGRLRLNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTARYHPLMKTNLVSHSLKYLTRTYLGYDIRQGMHDPYENCVSVMRLYKRMRSLDHLGEVVSSSIAPVAHNLDSYSAKDLEKMTPDKLYEISRSNFKCWCVDSRQVMQS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 131480 138023 + Sed0018126.2 Sed05g0014 712640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0014 325 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 4 319 IPR047021 GO:0004527(PANTHER)|GO:0004527(InterPro)|GO:0005634(PANTHER)
Sed05g0014 325 CDD REX4_like 101 265 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Sed05g0014 325 Gene3D - 98 282 IPR036397 GO:0003676(InterPro)
Sed05g0014 325 SUPERFAMILY Ribonuclease H-like 101 268 IPR012337 -
Sed05g0014 325 SMART exoiiiendus 99 273 IPR013520 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0014 Sed-Chr5:131480 Sed05g0016 Sed-Chr5:131480 1.00E-178 dispersed
Sed05g0013 Sed-Chr5:131480 Sed05g0014 Sed-Chr5:131480 8.40E-179 tandem
Sed05g0014 Sed-Chr5:131480 Sed05g0015 Sed-Chr5:131480 1.60E-189 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0014 K18327 - csv:101206525 545.043