Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0080 ATGGCTGGTGATGGATTTGTAGTCCCTCAGGATTCTCAAGCGCTTTCAGTGAAGAAGAAGACGAAGAAGAACACTGTAAATTCCAGGAGCTGGGTTTCGTTGGACCATGAAGGAAGGGCTACGATTTTGGATGTGGATAAGTTTGGGATTATGCATAGGGTTCACATCAATGCCAGAGATCTTCGCCTTCTCGATCCCCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAACTGTGATTGTTCTCAATTTGGAGCACATCAAGTCGATTATCACAGCGCACGAGGTGCTGCTTAGGGATCCAATGGATGAAAATGTAGTTCCGATTGTTGAAGAATTGCAGAGACGGTTGCCTTCCACAAGCCCAAATTACCAAGGGCAAGGTGAAGATGAAGAGCCTCCTACCACCCAAAATGAGTTGGTTGAAAACGAATTTCCATTTGAGTTCCGTGCCTTAGAGGTTGTACTAGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATTCATATCCTGCTTTAGATGAGCTGACATCCAAGATTAACAGTCGTAACTTGGACCGAGTGCGCAAGCTGAAGAGTGCAATGACAAGGTTGACTAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGATGACGACGACATGGCAGAGCTTTACTTGTCACGAAAAGTAGCTAGCACCCCTGAAAGTGGCCGTGGGACTCCAGTGTGGTTTCATGCTTCTCCTAAAGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTTGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGAACATTAAACAAATTAATTACGTTGCGGGAGTACATCGATGACACAGAGGATTACATCAATATTCAGCTTGACAACCACAGAAATCAACTTATTCAGCTAGAACTCTATTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATCTTTGGAATGAATATTCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACTGGAATTGTTTGTGCAACCATTTACGTGTCGCTAAGCTCGTATGCGCGTTACAAAGGTATCGTTGGATCTTGA 1176 42.77 MAGDGFVVPQDSQALSVKKKTKKNTVNSRSWVSLDHEGRATILDVDKFGIMHRVHINARDLRLLDPLLSYPSTILGRETVIVLNLEHIKSIITAHEVLLRDPMDENVVPIVEELQRRLPSTSPNYQGQGEDEEPPTTQNELVENEFPFEFRALEVVLEAICSFLDARTRELETDSYPALDELTSKINSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVASTPESGRGTPVWFHASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELYLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGIVGS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 431442 436798 + Sed0027348.1 Sed05g0080 712706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0080 391 Coils Coil 194 221 - -
Sed05g0080 391 Gene3D Magnesium transport protein CorA, transmembrane region 328 382 - -
Sed05g0080 391 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 12 387 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed05g0080 391 MobiDBLite consensus disorder prediction 118 138 - -
Sed05g0080 391 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 327 378 IPR045863 -
Sed05g0080 391 CDD Mrs2_Mfm1p-like 31 388 IPR039204 -
Sed05g0080 391 Pfam Magnesium transporter MRS2-like 35 235 - -
Sed05g0080 391 Pfam Magnesium transporter MRS2-like 271 318 - -
Sed05g0080 391 Gene3D Magnesium transport protein CorA, transmembrane region 105 321 - -
Sed05g0080 391 Gene3D - 13 102 - -
Sed05g0080 391 FunFam Magnesium transporter MRS2-1 18 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0080 Sed-Chr5:431442 Sed06g2048 Sed-Chr6:44545785 1.30E-84 dispersed
Sed04g1953 Sed-Chr4:34210691 Sed05g0080 Sed-Chr5:431442 5.00E-148 wgd
Sed05g0080 Sed-Chr5:431442 Sed09g0722 Sed-Chr9:11925834 1.80E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0080 K16075 - csv:101220452 667.151