Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0080 ATGGCTGGTGATGGATTTGTAGTCCCTCAGGATTCTCAAGCGCTTTCAGTGAAGAAGAAGACGAAGAAGAACACTGTAAATTCCAGGAGCTGGGTTTCGTTGGACCATGAAGGAAGGGCTACGATTTTGGATGTGGATAAGTTTGGGATTATGCATAGGGTTCACATCAATGCCAGAGATCTTCGCCTTCTCGATCCCCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAACTGTGATTGTTCTCAATTTGGAGCACATCAAGTCGATTATCACAGCGCACGAGGTGCTGCTTAGGGATCCAATGGATGAAAATGTAGTTCCGATTGTTGAAGAATTGCAGAGACGGTTGCCTTCCACAAGCCCAAATTACCAAGGGCAAGGTGAAGATGAAGAGCCTCCTACCACCCAAAATGAGTTGGTTGAAAACGAATTTCCATTTGAGTTCCGTGCCTTAGAGGTTGTACTAGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATTCATATCCTGCTTTAGATGAGCTGACATCCAAGATTAACAGTCGTAACTTGGACCGAGTGCGCAAGCTGAAGAGTGCAATGACAAGGTTGACTAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGATGACGACGACATGGCAGAGCTTTACTTGTCACGAAAAGTAGCTAGCACCCCTGAAAGTGGCCGTGGGACTCCAGTGTGGTTTCATGCTTCTCCTAAAGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTTGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGAACATTAAACAAATTAATTACGTTGCGGGAGTACATCGATGACACAGAGGATTACATCAATATTCAGCTTGACAACCACAGAAATCAACTTATTCAGCTAGAACTCTATTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATCTTTGGAATGAATATTCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACTGGAATTGTTTGTGCAACCATTTACGTGTCGCTAAGCTCGTATGCGCGTTACAAAGGTATCGTTGGATCTTGA 1176 42.77 MAGDGFVVPQDSQALSVKKKTKKNTVNSRSWVSLDHEGRATILDVDKFGIMHRVHINARDLRLLDPLLSYPSTILGRETVIVLNLEHIKSIITAHEVLLRDPMDENVVPIVEELQRRLPSTSPNYQGQGEDEEPPTTQNELVENEFPFEFRALEVVLEAICSFLDARTRELETDSYPALDELTSKINSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVASTPESGRGTPVWFHASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELYLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGIVGS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 431442 436798 + Sed0027348.1 Sed05g0080 712706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0080 391 Coils Coil 194 221 - -
Sed05g0080 391 Gene3D Magnesium transport protein CorA, transmembrane region 328 382 - -
Sed05g0080 391 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 12 387 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed05g0080 391 MobiDBLite consensus disorder prediction 118 138 - -
Sed05g0080 391 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 327 378 IPR045863 -
Sed05g0080 391 CDD Mrs2_Mfm1p-like 31 388 IPR039204 -
Sed05g0080 391 Pfam Magnesium transporter MRS2-like 35 235 - -
Sed05g0080 391 Pfam Magnesium transporter MRS2-like 271 318 - -
Sed05g0080 391 Gene3D Magnesium transport protein CorA, transmembrane region 105 321 - -
Sed05g0080 391 Gene3D - 13 102 - -
Sed05g0080 391 FunFam Magnesium transporter MRS2-1 18 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0080 K16075 - - csv:101220452 667.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0080 Sed-Chr5:431442 Sed06g2048 Sed-Chr6:44545785 1.30E-84 dispersed
Sed04g1953 Sed-Chr4:34210691 Sed05g0080 Sed-Chr5:431442 5.00E-148 wgd
Sed05g0080 Sed-Chr5:431442 Sed09g0722 Sed-Chr9:11925834 1.80E-142 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g2048 . 1 447 MRS2 Gene Family AT1G16010 83.4 1.6e-203 706.4
Sed05g1392 . 1 446 MRS2 Gene Family AT1G16010 82.3 8.2e-200 694.1
Sed03g2573 . 6 380 MRS2 Gene Family AT1G16010 53.1 8.7e-109 391.7
Sed04g1953 . 1 366 MRS2 Gene Family AT5G64560 80.2 1.3e-156 550.4
Sed09g0722 . 1 361 MRS2 Gene Family AT5G64560 79.6 1.3e-156 550.4
Sed05g0080 . 1 364 MRS2 Gene Family AT5G64560 70.2 1.4e-131 467.2
Sed05g2636 . 21 495 MRS2 Gene Family AT3G19640 66.5 1.3e-158 557.4
Sed10g1946 . 39 494 MRS2 Gene Family AT3G19640 66.7 5.7e-154 542.0
Sed04g1594 . 3 446 MRS2 Gene Family AT3G58970 65.8 1.4e-146 517.3
Sed13g0547 . 55 447 MRS2 Gene Family AT3G58970 68.0 2.7e-139 493.0
Sed13g0549 . 24 359 MRS2 Gene Family AT3G58970 66.8 2.6e-113 406.8
Sed13g0548 . 55 358 MRS2 Gene Family AT3G58970 65.3 7.3e-100 362.1
Sed13g0550 . 24 270 MRS2 Gene Family AT3G58970 62.9 6.9e-74 275.8
Sed03g2573 . 6 380 MRS2 Gene Family AT2G03620 67.9 5.7e-134 475.3
Sed06g2048 . 13 447 MRS2 Gene Family AT2G03620 53.0 5.6e-113 405.6
Sed05g1392 . 11 446 MRS2 Gene Family AT2G03620 53.4 3.6e-112 402.9
Sed04g1953 . 1 328 MRS2 Gene Family AT5G09690 74.7 4.4e-126 448.7
Sed09g0722 . 1 323 MRS2 Gene Family AT5G09690 73.2 3.8e-122 435.6
Sed05g0080 . 1 326 MRS2 Gene Family AT5G09690 65.7 4.1e-108 389.0
Sed05g1392 . 40 382 MRS2 Gene Family AT5G09690 51.3 2.6e-78 290.0
Sed04g1953 . 12 288 MRS2 Gene Family AT5G09720 65.5 4.3e-88 322.4
Sed09g0722 . 1 283 MRS2 Gene Family AT5G09720 64.2 7.4e-88 321.6
Sed05g0080 . 11 286 MRS2 Gene Family AT5G09720 56.9 6.7e-73 271.9
Sed06g2048 . 1 447 MRS2 Gene Family AT1G80900 82.1 1.2e-198 690.3
Sed05g1392 . 1 446 MRS2 Gene Family AT1G80900 81.4 5.5e-196 681.4
Sed03g2573 . 6 380 MRS2 Gene Family AT1G80900 53.0 4.8e-107 386.0
Sed03g1863 . 105 444 MRS2 Gene Family AT5G22830 83.2 3.4e-156 549.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58