Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0089 ATGGGTGAGAAATTTTGGGGGAATGAAGAGAAAAGGGTTTTGGTGGAATCAGTTGTTGGTAGTGAAGCTTGTGAGTTCTTGATTTCATTGGCATCGAGCAATATCCTGCCCGAGGCTTTGCAATTGTCTCTCGGTGATTCGAGTCTGAATCCGGGGCTAAGCCAGCTTTTGGATGGTTCAGGTTGGAACTATGCAATCTTTTGGCGTGTGGTTACTTTGAAATCTGGGGCTTTGGCTTTAATTTGGGGAGATGGGAACTGTAATGATCCAAAGATTGGGATGGCAGTTTCTGGTGGGAATGGCCAGGGTGAGAAGAAAGAGGAATTGAAGAGGCAAGTCCTTCAAATGCTTCAATCCTCTTTTGGAGGGTCTGATAAGGATGGATATGGGGCAAGGAAGGAGGAAGCGTCTGATATCGAGATGCTCTACCTTACTTCAATGTATTATAAGTTCATGTGCGACTCGGGAAGCAGTCTGGGCGAGTCGTACAAATCCGGTAAGTCAATGTGGGCTTCCGATGTAACAAGTTGTTTGCGGAATTACCAATCGAGAGGGTTTCTAGCTAAAATGGCTGGTTTCCAGACTCTGGTATTTGTACCTGTAAAGTCAGGAGTTGTTGAACTTGGGTCTGTTAAGTCCATTCCTGAAGATCAGAGTGTTCTGGAGTTAGTTAGAGCTGCCTTTGGGGGATCAAATATTGCTCAATTAAAGGCTTTTCCAAGGATCTTTGGTCATGAACTAAGTTTAGGTGGAACAAAAGGACCGTCGTTAAGTATTAATTTTTCACCGAAGTTGGAAGATGATACAAACTTTTCTTCAGATGGTTATGAGCTGCAAGGTTTAGGTGCTAATCACATGTTTGCAAGCTCTTCTAATGGGTGTCGAAGCAATGGCAATGATGCAAAGATATTTCCTCATGGGAACCAAGAAATTGCCGGGGGCTTCAATGCTCAAACAAGACTTTCAACTATGGAATACCCGAGGGACGAGTCGTCACCTCAAGGAGATGACAAAAAACCTAGGAAGAGAGGGAGAAAGCCTGCTAATGGGAGAGAAGAACCATTGAATCATGTGGAAGCAGAGCGGCAGAGACGCGAGAAGCTTAACCAACGATTCTATGCATTGAGGGCTGTTGTCCCAAATATCTCTAAGATGGATAAGGCTTCTCTGCTCGGCGATGCTATTACGTATATCACCGATCTCCAGATGAAAATTAAGGTTATGGAGACTGAAAAACAGATCGCTAATAGGCAGAAAAATGCAGATGTTGATTTTCAGGCAAGAGAAGAGGATGCTGTTGTGAGAGTGAGTTGTCCTCTGGACTCACACCCTGTTTCTAAAGTAATCAAAACATTTAGGGAACATCAAATTGAAGCTCTAGAGTCCAATGTAACGACCACCACCGACAACGACAAAGTTATTCATTCTTTCTCCATTAGAACTGAAGGTGGTGCTGCAGAACAATTGAAGGAGAAGCTGTTGGCTGCCCTGTCAAAATGTTGA 1503 43.85 MGEKFWGNEEKRVLVESVVGSEACEFLISLASSNILPEALQLSLGDSSLNPGLSQLLDGSGWNYAIFWRVVTLKSGALALIWGDGNCNDPKIGMAVSGGNGQGEKKEELKRQVLQMLQSSFGGSDKDGYGARKEEASDIEMLYLTSMYYKFMCDSGSSLGESYKSGKSMWASDVTSCLRNYQSRGFLAKMAGFQTLVFVPVKSGVVELGSVKSIPEDQSVLELVRAAFGGSNIAQLKAFPRIFGHELSLGGTKGPSLSINFSPKLEDDTNFSSDGYELQGLGANHMFASSSNGCRSNGNDAKIFPHGNQEIAGGFNAQTRLSTMEYPRDESSPQGDDKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIKVMETEKQIANRQKNADVDFQAREEDAVVRVSCPLDSHPVSKVIKTFREHQIEALESNVTTTTDNDKVIHSFSIRTEGGAAEQLKEKLLAALSKC 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 527407 529568 + Sed0008015.1 Sed05g0089 712715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0089 500 SMART finulus 358 407 IPR011598 GO:0046983(InterPro)
Sed05g0089 500 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 417 IPR036638 GO:0046983(InterPro)
Sed05g0089 500 Gene3D - 345 419 IPR036638 GO:0046983(InterPro)
Sed05g0089 500 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 228 IPR025610 -
Sed05g0089 500 Coils Coil 398 418 - -
Sed05g0089 500 MobiDBLite consensus disorder prediction 330 363 - -
Sed05g0089 500 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983(InterPro)
Sed05g0089 500 FunFam Transcription factor bHLH13 345 419 - -
Sed05g0089 500 MobiDBLite consensus disorder prediction 325 363 - -
Sed05g0089 500 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983(InterPro)
Sed05g0089 500 CDD bHLH_AtAIB_like 349 420 - -
Sed05g0089 500 PANTHER MYC 46 499 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1765 Sed-Chr2:52396130 Sed05g0089 Sed-Chr5:527407 1.80E-72 dispersed
Sed05g0089 Sed-Chr5:527407 Sed12g0091 Sed-Chr12:516012 2.40E-70 dispersed
Sed05g0089 Sed-Chr5:527407 Sed05g0090 Sed-Chr5:527407 3.80E-286 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38411 PF14215 bHLH-MYC_N 1.90E-39 CL0161 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0089 - - - 0.0