Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0100 ATGGCTTCTAGCAACACTGGCTCCCCTTGTGGAGCATGCAAGTTTCTGCGTCGAAAATGCGCGCCCGATTGCATCTTCGCTCCTTACTTTTGCTCGGAACAAGGCCCCGCTACCTTCGCCGCCATTCATAGGGTGTTTGGAGCTAGTAATCTCTCTAAATTGCTCCTCCATGTCCCCGTTCCTCATCGCGCCGAGGCTGTTCTTACCATTGCATATCAAGCTCAAGCTCGCATTCATGATCCTGTTTATGGCTGTGTTTCTCATATCTTTTCTCTCCAACAACAGGTGGCATACTTACAAACACAGCTGATGCAAACCAAGGCTCAAGTAGCACAAACCCTGATTGATTCAGGAAGAAACATGGAAATATCTCAATGGACAGACAACCTCAATTTCTCCAATGGAATCCCAAATTTTCCAAATAATGATGAAACTCAAAATATGAACCTTGCAGTTTCTCCTCAGAGCTCTTTGGAATCAGCTGCCAACAATGATGAAGCTTTGTTCATGAATTTTCAAGAGAGCCAAAGCAGATCCCCACAAGCTCAATTTCAACAATTTCCTAGAAAATTAAGACCAGCTTCTTGTCATGGTGATGTTGGAGAGCTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA 642 44.55 MASSNTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPATFAAIHRVFGASNLSKLLLHVPVPHRAEAVLTIAYQAQARIHDPVYGCVSHIFSLQQQVAYLQTQLMQTKAQVAQTLIDSGRNMEISQWTDNLNFSNGIPNFPNNDETQNMNLAVSPQSSLESAANNDEALFMNFQESQSRSPQAQFQQFPRKLRPASCHGDVGELQALALRMMRN 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 580011 581629 + Sed0019578.1 Sed05g0100 712726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0100 213 Pfam Lateral organ boundaries (LOB) domain 9 107 IPR004883 -
Sed05g0100 213 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 176 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Sed05g0100 213 ProSiteProfiles LOB domain profile. 8 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4321 Sed-Chr1:71321911 Sed05g0100 Sed-Chr5:580011 1.00E-81 dispersed
Sed05g0100 Sed-Chr5:580011 Sed09g0109 Sed-Chr9:822546 1.10E-37 dispersed
Sed05g0100 Sed-Chr5:580011 Sed05g0101 Sed-Chr5:585913 8.10E-36 tandem
Sed01g4320 Sed-Chr1:71312615 Sed05g0100 Sed-Chr5:580011 4.20E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38415 PF03195 LOB 4.60E-36 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0100 K13944 - csv:101214521 281.567