Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0101 ATGACAGGGTCTGGTTCTCCATGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGTCAGAGGCTGTGTTTTTGCACCTTATTTTTGCCATGAACAAGGTGCCACTCATTTTGCTGCTATTCATAAGGTGTTTGGAGCTAGCAATGTCTCTAAGCTTCTTGCTCGCCTTCCGGTTACCGAGCGATGCGAGGCTGCCGTTACCATTTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAAGCACAGCTTGCTTCTCTCAAAGAACAAGCAGCCGGAAACATAATGAACTGCTCCGGTAACGGGAGCGGGGTCGAGAAGAATTGCAGGAAGGCAATTCCTTCTCATTTTCAAGATCTCCATAACTGGTTTCAATCGGACGTAGCCCCCGAGTTCAACCTGAACCCGACTCACAATTCGGCATCAAACCCTTATTACGACGAGAATTATCGCATCATGGTGAATTCCCAATCGAACGGGAACTATGAACATCATCACGTGACTAAAATGGAGGAAAGTGGATCATATGAAAGCTTTGAAGAAACCTCAGGGTATTCCATGTATACTCTTGATCATCTGCATTCAAATGTTCAACAATGGAGCTTCAATGAATCTGCTGATGATTTGCAATCAGTTGCTTTTGGGAATACTAGACATTGGTGA 714 44.54 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVTERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAGNIMNCSGNGSGVEKNCRKAIPSHFQDLHNWFQSDVAPEFNLNPTHNSASNPYYDENYRIMVNSQSNGNYEHHHVTKMEESGSYESFEETSGYSMYTLDHLHSNVQQWSFNESADDLQSVAFGNTRHW 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 585913 587198 - Sed0008249.1 Sed05g0101 712727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0101 237 Coils Coil 87 107 - -
Sed05g0101 237 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Sed05g0101 237 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Sed05g0101 237 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 230 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4320 Sed-Chr1:71312615 Sed05g0101 Sed-Chr5:585913 3.80E-106 dispersed
Sed05g0101 Sed-Chr5:585913 Sed07g0525 Sed-Chr7:3946096 2.10E-40 dispersed
Sed05g0100 Sed-Chr5:580011 Sed05g0101 Sed-Chr5:585913 8.10E-36 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38416 PF03195 LOB 6.60E-36 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0101 K13945 - csv:101214764 395.971