Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0107 ATGGAATCCTCATACTTTTCGTTCATCAGTTCCGATTTCTCGCCGGAATCTTCATTCGTATCGCCGGAGCAGTCGTCGTTTTCATGGAGCGAGTTTTTCTCGATTCAAAGTGCCCTAGAAAACTCAATTTCATTCCCGGATGAGTTTCTCGGCAATCAAGGATCGGAATCGAAAATTGCAGTGAAGGAAGAGATGGAAGTGAGTTCAATTGAGTTCGAGGCTGAGAATCGGAGTGCGGCGGCGGCGGAGAAGAGTTACAGAGGAGTACGGCGGCGGCCGTGGGGGAAATACGCGGCGGAGATTAGGGATTCGACGAACAATGGAGTTAGGGTTTGGCTGGGGACATTTGACAGCGCGGAAGAGGCGGCGTTGGCGTATGATCAGGCGGCGTTTACGATGAGAGGAGAATTGGCGGTGATGAATTTTCCGGCGGAAATGGTGAGGGAATCGCTGCAGGGAATTGAGTGCCGGTTTGAAGAAGGTTGCTCGCCGGTGGTGGCGTTGAAGAGAAAACACTCGCTGAGACGAAAGTCGGCGGCGGCGACGGCGGTGGCGGTGGCGGTGGCGGAGAAGAAGATGAAGAAGAAAAAGAAGAATGTGGTGATGATTTTGGAAGATTTGGGAACAGAGTATTTGGAAGAGCTTTTGATGCTGAGTTCTTGTGAGACTAATTCTTTATGA 681 50.95 MESSYFSFISSDFSPESSFVSPEQSSFSWSEFFSIQSALENSISFPDEFLGNQGSESKIAVKEEMEVSSIEFEAENRSAAAAEKSYRGVRRRPWGKYAAEIRDSTNNGVRVWLGTFDSAEEAALAYDQAAFTMRGELAVMNFPAEMVRESLQGIECRFEEGCSPVVALKRKHSLRRKSAAATAVAVAVAEKKMKKKKKNVVMILEDLGTEYLEELLMLSSCETNSL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 648617 649485 + Sed0020379.1 Sed05g0107 712733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0107 226 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0107 226 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0107 226 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0107 226 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Sed05g0107 226 Pfam AP2 domain 85 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0107 226 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0107 226 CDD AP2 84 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0107 226 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0107 226 PANTHER DNA-BINDING DOMAIN 55 189 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed05g0107 226 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0107 Sed-Chr5:648617 Sed07g0482 Sed-Chr7:3678213 1.20E-42 dispersed
Sed01g4313 Sed-Chr1:71258306 Sed05g0107 Sed-Chr5:648617 8.50E-71 wgd
Sed12g1028 Sed-Chr12:6599697 Sed05g0107 Sed-Chr5:648617 4.80E-21 wgd
Sed02g1402 Sed-Chr2:50207612 Sed05g0107 Sed-Chr5:648617 4.80E-21 wgd
Sed04g1981 Sed-Chr4:34382617 Sed05g0107 Sed-Chr5:648617 3.70E-22 wgd
Sed05g0107 Sed-Chr5:648617 Sed07g0140 Sed-Chr7:1299211 7.50E-16 wgd
Sed05g0107 Sed-Chr5:648617 Sed09g0686 Sed-Chr9:9901087 9.10E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38417 PF00847 AP2 8.60E-16 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0107 K14516 - csv:101220325 258.455