Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0108 ATGGGAAGTGACCAATTGAATGTTCTTAATGCACTGGATGTGGCCAAAACACAGTGGTACCATTTCACAGCAATTATCATTGCTGGAATGGGATTCTTCACTGATGCATATGATCTATTCTGCATATCTCTTGTCACCAAATTACTTGGAAGAATATACTATCATGTTGATGGAGCACCAAAGCCTGGATCATTGCCTCCAAATGTTTCAGCAGCTGTTAATGGTGTGGCATTTTGTGGAACTCTAACCGGCCAACTCTTCTTCGGTTGGTTGGGCGACAAAATGGGGCGAAAACGAGTTTACGGCATGACTCTCATGGTGATGGTTATAACCTCTATAGGTTCAGGCCTGTCATTTGGCCGCAATGCACAATCGGTCATGACTACTCTCTGCTTATTTCGGTTCTGGCTCGGGTTCGGCATTGGTGGCGATTATCCTCTTTCGGCAACCATCATGTCGGAATACTCGAATAAGAAGACTCGTGGTGCATTCATTGCTGCAGTCTTTGCAATGCAGGGGTTTGGAATTTTGGGCGGAGGGATATTTGCTATTCTTATCTCTTCAATTTTTAAGGCCAGTTTTCCTGCTCCACCTTATTCAGTTGATCCAATTGCATCCACTGTGCCACAAACAGATTACATTTGGAGGATTATCCTAATGGTTGGAGCTCTTCCAGCTGCTCTTACTTACTATTGGAGGATGAAAATGCCCGAAACTGCGCGGTATACGGCTCTTGTCGCCAAAGATACAACCCAAGCTGCATCAGATATGTCAAAAGTTCTTCAAATGGACATTGAGGCTGAAGGGAAAAGTCCTCCTCAAGGAAGTGCAGTGGCTAGTACAAGTGCAAGTTCATATGGCTTATTCTCTTCCGAGTTTTTACGTCGCCACGGAACTCACTTACTCGGAACTACAATGACTTGGTTTTTACTTGACATTGCATTCTACAGTCAGAACTTGTTTCAAAAAGATATCTTCAGTGCAGTTGGATGGATTCCACCAGCAGATACTATGAATGCAATTGAAGAAGTCTTCAAAATAGCAAGGGCTCAAACTCTCATTGCCCTTTGCAGTACTGTGCCTGGCTACTGGTTCACAGTGGCTCTCATTGACAAGATTGGAAGATTTTTCATTCAACTTATGGGATTCTTTTTCATGACTGTCTTCATGTTTGCTCTTGCCATTCCATATCATCACTGGACTCTCAAGGGAAATCATATTGGCTTCATCGTCCTCTACTCGTTAACATTCTTCTTTGCGAATTTCGGACCAAATGCGACTACTTTTGTTGTCCCAGCTGAAATCTTTCCAGCACGATTCCGTTCTACTTGCCACGGTATATCATCGGCGTCTGGAAAGCTTGGAGCTATGGTGGGTGCATTTGGTTTTCTTTATTTGGCTCAAGATCAGGACAAGAGCAAAACTGATGCAGGATATCCTCCTGGTATTGGTATGAAGAACTCACTCATGTTTCTAGCCGGGCTAAATTTATTGGGAATGTTGTTTACTTTTCTCGTACCGGAAGCGAAAGGAAAATCGTTGGAAGAAATGTCGGGGGAGAACGAAGATGGAACCGTGAGAGAATTGGGTGGTCAGGCATCAACCAGCACCACAGCCTCACAAGTTTGA 1629 43.83 MGSDQLNVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAPKPGSLPPNVSAAVNGVAFCGTLTGQLFFGWLGDKMGRKRVYGMTLMVMVITSIGSGLSFGRNAQSVMTTLCLFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGGGIFAILISSIFKASFPAPPYSVDPIASTVPQTDYIWRIILMVGALPAALTYYWRMKMPETARYTALVAKDTTQAASDMSKVLQMDIEAEGKSPPQGSAVASTSASSYGLFSSEFLRRHGTHLLGTTMTWFLLDIAFYSQNLFQKDIFSAVGWIPPADTMNAIEEVFKIARAQTLIALCSTVPGYWFTVALIDKIGRFFIQLMGFFFMTVFMFALAIPYHHWTLKGNHIGFIVLYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAMVGAFGFLYLAQDQDKSKTDAGYPPGIGMKNSLMFLAGLNLLGMLFTFLVPEAKGKSLEEMSGENEDGTVRELGGQASTSTTASQV 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 655102 656730 + Sed0018790.1 Sed05g0108 712734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0108 542 SUPERFAMILY MFS general substrate transporter 12 518 IPR036259 -
Sed05g0108 542 MobiDBLite consensus disorder prediction 515 542 - -
Sed05g0108 542 MobiDBLite consensus disorder prediction 528 542 - -
Sed05g0108 542 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 511 IPR020846 GO:0022857(InterPro)
Sed05g0108 542 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 516 - -
Sed05g0108 542 Gene3D MFS general substrate transporter like domains 20 534 IPR036259 -
Sed05g0108 542 Pfam Sugar (and other) transporter 26 518 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed05g0108 542 NCBIfam phosphate:H+ symporter 11 520 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Sed05g0108 542 CDD MFS_PhT 25 510 - -
Sed05g0108 542 FunFam Inorganic phosphate transporter 1-6 20 529 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2401 Sed-Chr1:18018905 Sed05g0108 Sed-Chr5:655102 4.70E-141 dispersed
Sed05g0108 Sed-Chr5:655102 Sed13g0089 Sed-Chr13:566724 3.40E-179 dispersed
Sed01g3031 Sed-Chr1:33200100 Sed05g0108 Sed-Chr5:655102 8.00E-223 transposed
Sed12g1032 Sed-Chr12:6680763 Sed05g0108 Sed-Chr5:655102 5.40E-227 wgd
Sed02g1407 Sed-Chr2:50261134 Sed05g0108 Sed-Chr5:655102 1.10E-230 wgd
Sed04g1985 Sed-Chr4:34407701 Sed05g0108 Sed-Chr5:655102 4.80E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0108 K08176 - mtr:25499257 888.256