Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0134 ATGAAGAGTGATGTTAAGATAAAAAGGGGAAGGAGATCTGGAAAAGGGGAGAATAATAGGATGTTAATGAAGTGTTTATGTTCTGGAGAGAAAAGGGCTAGGGATGATGTGATTCCTCCATCAGAATCACCTTTGGCCTTGGAGAATTCGGCAAGCGAACGCTCTTCACGGACTGGGGAGATCATCAAGAAGCCAGAAGTTGGCAATATAGAAGAAGCCGAGTCTTCCCTTCGTGAGAGTGGTTGTTTGAATTATGAGGAAGCAAGAGCAATGTTGGGAAGATATGAGTATCAAAAGGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATCACTACAGTAAGTAGTAAGATAATGATCTCCATTGCTAGAAGAGGAGGCCGTCCAAGGAGACGATCACAAAATGTTAGTACCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCTTTCTTAAGGCAAAATCGTTGCAAGGCCTTGGGAGATTTAGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCTGAAGGCTTGACTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACTAAGGCCGTGAAGCTGCTACCAGAACTATGGGAACTAAGCGATTCTTCTCAAGATGCGATCCTGTCATATCGGCGAGCACTCCTTCATCAGTGGAACCTTGATGTGGAAACCACTGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAAGTGAAGCATGCCCTCCGAATCTCAGGTCCCAAATGGACAGCTCATTTGTACCCAAAAACAATATTGAAGAAGCTATACTTTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAAAGGATTGATTGGGATCCATCAATCTTGGATCACCTCACCTTTGCTTTAACAATATCAGGTGATACAAGGGCTTTAGCAGGCCAAATAGAGGAACTGCCTCCTGGGATTGTACATCGAAAGGATAGGTACCGTGCTCTAGCCCTTTGTTATCATGGAGCGGGGGAAGACTTGGCTGCTTTGAATCTACTGAGGAAATTGTTGGGCAGTCACGAGGATCCTACATCTCTTCCTGCTTTATTAATGGCGTCGAAGATTTGCAGAGAGAACTGCAACCTTCCTGAAGAAGGAATGAGTTATGCTTGTAGAGCTCTTCAAAACTTGGATGTTGAATGTGATCAATTAGAAGGTGTTGCCAACTGTTTGTTGGGTGTCTCACAGTCTGTATGTTCTGAATCAGCAGTTGCAAATTCCGAACGGTCCACCAGACAATCTGAGGCGATAGTGGCACTGGAAGCTGCATGGAAGAAGACTAGAATGACCGATCCTAATGTTGTCTACCATTTGAGTCTTGAATATGCCAAAGAGAGGAAGTTGGATTCGGCACTACATTACGCAAAGAAGTGTCTCAAACTGGAATGTGGATCTAATGTTAGAACTTGGTTACTAGTGGCTAGGATTCTCTCTGCCCAAAAACGATTTACGGATGGCGAGAGTATTATAGATGCAGCTCTGGAGCAGACGGGAAAATGGAATCAAGGCGAATTGCTTCGATTGAAAGCAAAGCTTCTGATTGCACAGGATGAGTTGAAAGGTGCTATTGGGACTTATACTCATTTACTTGCAGTTTTTCAAGTTCAGAGTAAAAGTTTTGGCTTGGGAGATAAGAAGCTACATGAGAGCAGCAGAAATTATGTTAGAAGTTTGCAATTGGAAGTGTGGCATGATTTAGCTTTAGTCTATATAAAGCTCTCACAGTGGCACGATGTTGAGGCCTGCCTTTCGAAGTCGAAGGCCATACATTTGCATTCGGCTTCTAGATGTCATATCACAGGTTTACTTTATGAAGCAAAAGGCTTATATAAAGAAGCTCTGAAAGCTTTTATGGCTGCTCTAACCATCGATCCCAATCATGTCCCAAGCTTGGTTTCATCTGCTGTGGTTATCAGACATCTCAACCACCAACCGCACCCCATTATTCGAAGCTTTCTGATGGATGCTCTACGGCTCGACCAGACGAACCACGTTGCGTGGTACAATCTCGGGCTATTCTACAAATCTGAGGGAACCAAGTCTTCATTGGCAGAAGCTGTTGAATGCTTTGAGGCTGCAACTTTTCTTGAAGAAACTGCTCCTGTTGAACCCTTTAGATAA 2205 42.9 MKSDVKIKRGRRSGKGENNRMLMKCLCSGEKRARDDVIPPSESPLALENSASERSSRTGEIIKKPEVGNIEEAESSLRESGCLNYEEARAMLGRYEYQKGNIEAALHVFEGIDITTVSSKIMISIARRGGRPRRRSQNVSTPPMSMHAVSLLLEAIFLKAKSLQGLGRFREAAQSCKVILDILESSFPEGLTENFGADCKLQETVTKAVKLLPELWELSDSSQDAILSYRRALLHQWNLDVETTARIQKEFAIFLLYSGSEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLTFALTISGDTRALAGQIEELPPGIVHRKDRYRALALCYHGAGEDLAALNLLRKLLGSHEDPTSLPALLMASKICRENCNLPEEGMSYACRALQNLDVECDQLEGVANCLLGVSQSVCSESAVANSERSTRQSEAIVALEAAWKKTRMTDPNVVYHLSLEYAKERKLDSALHYAKKCLKLECGSNVRTWLLVARILSAQKRFTDGESIIDAALEQTGKWNQGELLRLKAKLLIAQDELKGAIGTYTHLLAVFQVQSKSFGLGDKKLHESSRNYVRSLQLEVWHDLALVYIKLSQWHDVEACLSKSKAIHLHSASRCHITGLLYEAKGLYKEALKAFMAALTIDPNHVPSLVSSAVVIRHLNHQPHPIIRSFLMDALRLDQTNHVAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEETAPVEPFR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 825336 830787 + Sed0021180.1 Sed05g0134 712760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0134 734 PANTHER PROTEIN NPG1 19 734 IPR043376 -
Sed05g0134 734 Gene3D Tetratricopeptide repeat domain 65 569 IPR011990 GO:0005515(InterPro)
Sed05g0134 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515(InterPro)
Sed05g0134 734 SMART tpr_5 692 728 IPR019734 GO:0005515(InterPro)
Sed05g0134 734 SMART tpr_5 460 493 IPR019734 GO:0005515(InterPro)
Sed05g0134 734 SMART tpr_5 531 564 IPR019734 GO:0005515(InterPro)
Sed05g0134 734 SMART tpr_5 588 621 IPR019734 GO:0005515(InterPro)
Sed05g0134 734 SMART tpr_5 622 655 IPR019734 GO:0005515(InterPro)
Sed05g0134 734 SMART tpr_5 495 528 IPR019734 GO:0005515(InterPro)
Sed05g0134 734 SMART tpr_5 153 186 IPR019734 GO:0005515(InterPro)
Sed05g0134 734 MobiDBLite consensus disorder prediction 33 67 - -
Sed05g0134 734 Gene3D - 572 727 - -
Sed05g0134 734 Pfam Tetratricopeptide repeat 629 655 IPR019734 GO:0005515(InterPro)
Sed05g0134 734 SUPERFAMILY TPR-like 441 560 IPR011990 GO:0005515(InterPro)
Sed05g0134 734 SUPERFAMILY TPR-like 531 706 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4285 Sed-Chr1:71098985 Sed05g0134 Sed-Chr5:825336 9.60E-308 dispersed
Sed01g4286 Sed-Chr1:71098985 Sed05g0134 Sed-Chr5:825336 9.60E-308 dispersed
Sed05g0134 Sed-Chr5:825336 Sed05g2426 Sed-Chr5:36611483 4.30E-161 dispersed
Sed05g0134 Sed-Chr5:825336 Sed05g0135 Sed-Chr5:825336 1.20E-307 tandem
Sed01g4284 Sed-Chr1:71098985 Sed05g0134 Sed-Chr5:825336 0.00E+00 wgd
Sed02g1422 Sed-Chr2:50377458 Sed05g0134 Sed-Chr5:825336 4.80E-236 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0134 K21843 - csv:101223229 1212.59