Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0135 ATGTTAGTACCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCTTTCTTAAGGCAAAATCGTTGCAAGGCCTTGGGAGATTTAGAGGAGACAGTTACTAAGGCCGTGAAGCTGCTACCAGAACTATGGGAACTAAGCGATTCTTCTCAAGATGCGATCCTGTCATATCGGCGAGCACTCCTTCATCAGTGGAACCTTGATGTGGAAACCACTGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAAGTGAAGCATGCCCTCCGAATCTCAGGTCCCAAATGGACAGCTCATTTGTACCCAAAAACAATATTGAAGAAGCTATACTTTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAAAGGATTGATTGGGATCCATCAATCTTGGATCACCTCACCTTTGCTTTAACAATATCAGGTGATACAAGGGCTTTAGCAGGCCAAATAGAGGAACTGCCTCCTGGGATTGTACATCGAAAGGATAGGTACCGTGCTCTAGCCCTTTGTTATCATGGAGCGGGGGAAGACTTGGCTGCTTTGAATCTACTGAGGAAATTGTTGGGCAGTCACGAGGATCCTACATCTCTTCCTGCTTTATTAATGGCGTCGAAGATTTGCAGAGAGAACTGCAACCTTCCTGAAGAAGGAATGAGTTATGCTTGTAGAGCTCTTCAAAACTTGGATGTTGAATGTGATCAATTAGAAGGTGTTGCCAACTGTTTGTTGGGTGTCTCACAGTCTGTATGTTCTGAATCAGCAGTTGCAAATTCCGAACGGTCCACCAGACAATCTGAGGCGATAGTGGCACTGGAAGCTGCATGGAAGAAGACTAGAATGACCGATCCTAATGTTGTCTACCATTTGAGTCTTGAATATGCCAAAGAGAGGAAGTTGGATTCGGCACTACATTACGCAAAGAAGTGTCTCAAACTGGAATGTGGATCTAATGTTAGAACTTGGTTACTAGTGGCTAGGATTCTCTCTGCCCAAAAACGATTTACGGATGGCGAGAGTATTATAGATGCAGCTCTGGAGCAGACGGGAAAATGGAATCAAGGCGAATTGCTTCGATTGAAAGCAAAGCTTCTGATTGCACAGGATGAGTTGAAAGGTGCTATTGGGACTTATACTCATTTACTTGCAGTTTTTCAAGTTCAGAGTAAAAGTTTTGGCTTGGGAGATAAGAAGCTACATGAGAGCAGCAGAAATTATGTTAGAAGTTTGCAATTGGAAGTGTGGCATGATTTAGCTTTAGTCTATATAAAGCTCTCACAGTGGCACGATGTTGAGGCCTGCCTTTCGAAGTCGAAGGCCATACATTTGCATTCGGCTTCTAGATGTCATATCACAGGTTTACTTTATGAAGCAAAAGGCTTATATAAAGAAGCTCTGAAAGCTTTTATGGCTGCTCTAACCATCGATCCCAATCATGTCCCAAGCTTGGTTTCATCTGCTGTGGTTATCAGACATCTCAACCACCAACCGCACCCCATTATTCGAAGCTTTCTGATGGATGCTCTACGGCTCGACCAGACGAACCACGTTGCGTGGTACAATCTCGGGCTATTCTACAAATCTGAGGGAACCAAGTCTTCATTGGCAGAAGCTGTTGAATGCTTTGAGGCTGCAACTTTTCTTGAAGAAACTGCTCCTGTTGAACCCTTTAGATAA 1698 43.35 MLVPRQCLCMLSVYSWKPSFLRQNRCKALGDLEETVTKAVKLLPELWELSDSSQDAILSYRRALLHQWNLDVETTARIQKEFAIFLLYSGSEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLTFALTISGDTRALAGQIEELPPGIVHRKDRYRALALCYHGAGEDLAALNLLRKLLGSHEDPTSLPALLMASKICRENCNLPEEGMSYACRALQNLDVECDQLEGVANCLLGVSQSVCSESAVANSERSTRQSEAIVALEAAWKKTRMTDPNVVYHLSLEYAKERKLDSALHYAKKCLKLECGSNVRTWLLVARILSAQKRFTDGESIIDAALEQTGKWNQGELLRLKAKLLIAQDELKGAIGTYTHLLAVFQVQSKSFGLGDKKLHESSRNYVRSLQLEVWHDLALVYIKLSQWHDVEACLSKSKAIHLHSASRCHITGLLYEAKGLYKEALKAFMAALTIDPNHVPSLVSSAVVIRHLNHQPHPIIRSFLMDALRLDQTNHVAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEETAPVEPFR 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 825336 830787 + Sed0021180.2 Sed05g0135 712761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0135 565 PANTHER PROTEIN NPG1 31 565 IPR043376 -
Sed05g0135 565 SMART tpr_5 523 559 IPR019734 GO:0005515(InterPro)
Sed05g0135 565 SMART tpr_5 362 395 IPR019734 GO:0005515(InterPro)
Sed05g0135 565 SMART tpr_5 326 359 IPR019734 GO:0005515(InterPro)
Sed05g0135 565 SMART tpr_5 453 486 IPR019734 GO:0005515(InterPro)
Sed05g0135 565 SMART tpr_5 419 452 IPR019734 GO:0005515(InterPro)
Sed05g0135 565 SMART tpr_5 291 324 IPR019734 GO:0005515(InterPro)
Sed05g0135 565 ProSiteProfiles TPR repeat profile. 453 486 IPR019734 GO:0005515(InterPro)
Sed05g0135 565 Pfam Tetratricopeptide repeat 460 486 IPR019734 GO:0005515(InterPro)
Sed05g0135 565 SUPERFAMILY TPR-like 362 537 IPR011990 GO:0005515(InterPro)
Sed05g0135 565 SUPERFAMILY TPR-like 272 391 IPR011990 GO:0005515(InterPro)
Sed05g0135 565 Gene3D Tetratricopeptide repeat domain 24 553 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1422 Sed-Chr2:50377458 Sed05g0135 Sed-Chr5:825336 1.70E-172 dispersed
Sed05g0135 Sed-Chr5:825336 Sed05g2426 Sed-Chr5:36611483 3.60E-123 dispersed
Sed05g0134 Sed-Chr5:825336 Sed05g0135 Sed-Chr5:825336 1.20E-307 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0135 K21843 - csv:101223229 891.723