Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0150 ATGAAGTTCAATACCCAGATTTTGTTCTGTGTGTTTTTGTACTGTTGGATTGGTTTTTGTGCTGGGTTTAGTGAAGGAGAAGCCTTGGCTTTGGTTTCGTTTAAATCAGGGCTTGTGGATCCGCTGAAATGGCTTAGCGATTGGAAGTTGGGGAATGGAAATGGTGGATTTGTTGGGCATTGTAAATGGACCGGAGTTTTTTGCAACTCAAATGGAGCTGTTGAGAAACTGAGCCTTTCTCGTATGAATCTCAGTGGCATTTTGTCGAACGACTTGCAGGCATTGACGAAGCTTAGTGTTCTTGATTTGAGTTGCAATGGATTTTCATCTTCTTTGCCAAAATCTATTGGGAATCTCACTTCTCTGGTGAGTTTTGATGTTAGTGAAAACTTTTTTGTTGGCGAGATTCCACTTGGGTTTGGAAAGATGGGTGGATTGATGAACTTCAATGTTTCAAGCAACAATTTCACTGGTTTAATTCCTGATGATCTTGGAAATGCTACTTTTCTGGAGATTTTGGATCTTCGGGGGAGTTTTTTTGAAGGGTCAGTTCCTTTATCTTTCAAGAATTTGCAGAAGTTGAAGTTTCTTGGACTTTCCGGGAACAATCTGACCGGTCGAATCCCGCTCGAGATCGGTCAGATGTCGTCGTTGGAGACGGTTATCATTGGATACAATGAGTTTGAAGGAGGGATTCCATCTGAATTTGGAAATCTCACCAATCTGAAGTATCTTGATTTGGCTGTGGGAAAACTTGGTGGTGGCATTCCTGCTGAGCTTGGGAGGCTTAAGCATCTTGAGACATTGTTTCTTTACAAGAACAAATTCGAAGATCGAATTCCGTCGTCGATTGGCAATGCTACTTCATTGGTGTTTCTTGATCTTTCAGACAACATGTTGACAGGGGACATTCCAGTTGAGGTTGCTGAATTGAAGAATTTGCAGCTGTTGAATCTAATGTGTAACAAGTTGTCTGGTGAAGTGCCTCTGGGGATTGGAGGGTTGGAAAAGTTGCAGGTTTTAGAGCTATGGAACAACTCTTTTACGGGCCAATTACCGGGCGATCTCGGTAAGAATTCAGAGTTGGTATGGTTGGATGTCTCATCCAATTCATTCTCAGGTCCAATTCCTGCTTCTTTATGCAATTGGGGCAATCTAACCAAGCTCATCCTTTTCAACAATGCCTTTTCGGGACCAATTCCAATTGGATTATCGTCATGTTACTCGCTCGTTCGTGTTCGAATACAGAACAATTTGTTGTCTAGTACGATACCAGTTGGTTTTGGAAAGCTTGGGAAACTTCAAAGGCTAGAGTTAGCAAACAATAGTCTCATTGGCAGTATCCCAAGTGATATTTCAAATTCTAAATCCCTTTCTTTTATTGATCTCTCTGAGAATAACCTTCATTCTTCTCTTCCTTCCTCAATTCTTTCCATTCCAAATCTCCAAACTTTTATAGTGTCTGATAATAACTTAGAAGGTGAAATTCCAGACCAGTTCCAGGAGTGTCCTGCACTTTCTGTTCTCGATCTCTCTTTGAACCATTTCGTAGGAAGCATTCCAGAAACCATTGCTTCATGCGAGAGATTGGTAGATCTGAATCTCAGAAACAACCAGTTAACTGGAGAAATCCCAGAACAGATTGCAAATATGCCTTCATTGTCGGTCCTCGATCTATCCAACAACTCTCTTACCGGTAGAATACCTGATAATTTCGGTATCTCTCCCGCACTTGAATGGTTTAATGTATCATTCAACAAGCTTGAGGGTCCTGTGCCATTAAATGGTGTGCTAAGAACAATCAATCCAAGTGATCTTCAGGGCAATGCTGGTCTATGTGGAGCTGTCCTACCTCCATGTTCATCAAGTTCAGCATTTAAATCAGGGCACGGGAACTCGCACACGATGCACACTATCGCCAGTTGGGTCATCGGAATATCTTCAGTTTTAGCATTTTGCATCGCTCTTTTCGGTGTTCGATCATTGTACAAGAGGTGGTATTCAAGTGGAAGTTGCTTTGAAGGGAGATATGAAATGGGTGGTGGAGATTGGCCATGGAGATTAATGGCATTCCAAAGGCTTGGATTCACAAGCAGTGACATTTTGGCTTGCATTAAGGAATCAAATGTAATTGGAATGGGAGCAACTGGGATTGTGTACAAAGCTGAAACTCCACAGCTAAAATCAATTGTGGCAGTCAAAAAGCTGTGGAGATCTGAACCAGATCTCGAAATGGGAAGCAGTGAAGGTCTTGTAGGAGAAGTGAATTTACTTGGAAAGTTAAGGCACCGGAACATAGTTCGTTTACTCGGATTCATGCATAATGATGTCGATGTAATGATTGTCTACGAGTTTATGCAAAATGGGAGCCTTGGAGAAGCCTTACATGGGAAACAAGCAGGGAGGCTGCTTGTGGACTGGGTTTCGAGATACAACATAGCAATGGGAGTTGCACAAGGGTTAGCTTATCTCCACCACGATTGCATCCCACCCATCATTCATCGCGATGTTAAGCCAAACAATATACTTCTCGATTCAAATCTCGAAGCACGGTTAGCTGATTTCGGGTTGGCACGGATGATGGCTCGAAAGAACGAGACAGTTTCAATGGTAGCTGGATCCTATGGCTACATTGCCCCTGAATATGGATACACTTTAAAGGTGGACGAAAAGATTGACATTTATAGCTACGGCGTCGTTCTTCTAGAGCTACTGACAGGGAAGAAGCCGTTAGATCCTGAGTTCGGAGAATCCGTGGACATTGTCGAATGGATTATTTGGAAGATTAGAGACAACAGACCCTTAGAAGAAGCCCTAGATCCCAATTTGGGAAATTCCAAGCATGTTCAAGAAGAAATGCTATTTGTTCTTAGAATAGCACTTCTCTGCACTGCAAAGCATCCAAAAGACAGGCCCTCCATGAGAGATATAATAACAATGCTTGGAGAAGCAAAACCAAGGAGAAAAAGCAACAGTGGCAATGAAGGATTTGGAACTAACAAAGAGAAGCCAGTTTTCAGCCCTTCTCCTGTAAATGGCCTTCTATAG 3048 42.32 MKFNTQILFCVFLYCWIGFCAGFSEGEALALVSFKSGLVDPLKWLSDWKLGNGNGGFVGHCKWTGVFCNSNGAVEKLSLSRMNLSGILSNDLQALTKLSVLDLSCNGFSSSLPKSIGNLTSLVSFDVSENFFVGEIPLGFGKMGGLMNFNVSSNNFTGLIPDDLGNATFLEILDLRGSFFEGSVPLSFKNLQKLKFLGLSGNNLTGRIPLEIGQMSSLETVIIGYNEFEGGIPSEFGNLTNLKYLDLAVGKLGGGIPAELGRLKHLETLFLYKNKFEDRIPSSIGNATSLVFLDLSDNMLTGDIPVEVAELKNLQLLNLMCNKLSGEVPLGIGGLEKLQVLELWNNSFTGQLPGDLGKNSELVWLDVSSNSFSGPIPASLCNWGNLTKLILFNNAFSGPIPIGLSSCYSLVRVRIQNNLLSSTIPVGFGKLGKLQRLELANNSLIGSIPSDISNSKSLSFIDLSENNLHSSLPSSILSIPNLQTFIVSDNNLEGEIPDQFQECPALSVLDLSLNHFVGSIPETIASCERLVDLNLRNNQLTGEIPEQIANMPSLSVLDLSNNSLTGRIPDNFGISPALEWFNVSFNKLEGPVPLNGVLRTINPSDLQGNAGLCGAVLPPCSSSSAFKSGHGNSHTMHTIASWVIGISSVLAFCIALFGVRSLYKRWYSSGSCFEGRYEMGGGDWPWRLMAFQRLGFTSSDILACIKESNVIGMGATGIVYKAETPQLKSIVAVKKLWRSEPDLEMGSSEGLVGEVNLLGKLRHRNIVRLLGFMHNDVDVMIVYEFMQNGSLGEALHGKQAGRLLVDWVSRYNIAMGVAQGLAYLHHDCIPPIIHRDVKPNNILLDSNLEARLADFGLARMMARKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLDPEFGESVDIVEWIIWKIRDNRPLEEALDPNLGNSKHVQEEMLFVLRIALLCTAKHPKDRPSMRDIITMLGEAKPRRKSNSGNEGFGTNKEKPVFSPSPVNGLL 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 901351 905107 - Sed0028108.1 Sed05g0150 712776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0150 1015 Gene3D Ribonuclease Inhibitor 24 309 IPR032675 -
Sed05g0150 1015 SMART serkin_6 705 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0150 1015 Pfam Leucine rich repeat N-terminal domain 26 69 IPR013210 -
Sed05g0150 1015 Pfam Leucine Rich Repeat 193 215 IPR001611 GO:0005515(InterPro)
Sed05g0150 1015 Pfam Leucine Rich Repeat 337 358 IPR001611 GO:0005515(InterPro)
Sed05g0150 1015 Pfam Leucine Rich Repeat 289 309 IPR001611 GO:0005515(InterPro)
Sed05g0150 1015 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Sed05g0150 1015 Pfam Leucine Rich Repeat 433 454 IPR001611 GO:0005515(InterPro)
Sed05g0150 1015 Pfam Leucine Rich Repeat 553 573 IPR001611 GO:0005515(InterPro)
Sed05g0150 1015 Pfam Leucine Rich Repeat 146 166 IPR001611 GO:0005515(InterPro)
Sed05g0150 1015 Pfam Leucine Rich Repeat 362 383 IPR001611 GO:0005515(InterPro)
Sed05g0150 1015 FunFam MDIS1-interacting receptor like kinase 1 705 789 - -
Sed05g0150 1015 PRINTS Leucine-rich repeat signature 551 564 - -
Sed05g0150 1015 PRINTS Leucine-rich repeat signature 290 303 - -
Sed05g0150 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 364 624 - -
Sed05g0150 1015 MobiDBLite consensus disorder prediction 982 1015 - -
Sed05g0150 1015 FunFam Leucine-rich repeat receptor protein kinase EMS1 280 363 - -
Sed05g0150 1015 SMART LRR_typ_2 335 359 IPR003591 -
Sed05g0150 1015 SMART LRR_typ_2 191 215 IPR003591 -
Sed05g0150 1015 SMART LRR_typ_2 95 119 IPR003591 -
Sed05g0150 1015 SMART LRR_typ_2 431 455 IPR003591 -
Sed05g0150 1015 SMART LRR_typ_2 551 575 IPR003591 -
Sed05g0150 1015 SMART LRR_typ_2 263 287 IPR003591 -
Sed05g0150 1015 SUPERFAMILY RNI-like 255 593 - -
Sed05g0150 1015 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 24 984 IPR050647 -
Sed05g0150 1015 Pfam Protein kinase domain 707 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0150 1015 ProSitePatterns Protein kinases ATP-binding region signature. 711 735 IPR017441 GO:0005524(InterPro)
Sed05g0150 1015 SUPERFAMILY Protein kinase-like (PK-like) 704 981 IPR011009 -
Sed05g0150 1015 SUPERFAMILY L domain-like 56 329 - -
Sed05g0150 1015 Gene3D Transferase(Phosphotransferase) domain 1 790 1002 - -
Sed05g0150 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 179 279 - -
Sed05g0150 1015 FunFam MDIS1-interacting receptor like kinase 1 790 999 - -
Sed05g0150 1015 ProSiteProfiles Protein kinase domain profile. 705 988 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0150 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0150 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 24 178 - -
Sed05g0150 1015 Gene3D Ribonuclease Inhibitor 310 628 IPR032675 -
Sed05g0150 1015 Gene3D Phosphorylase Kinase; domain 1 705 789 - -
Sed05g0150 1015 Pfam Leucine rich repeat 480 540 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0150 Sed-Chr5:901351 Sed07g1135 Sed-Chr7:8501633 8.10E-94 dispersed
Sed01g4261 Sed-Chr1:70902482 Sed05g0150 Sed-Chr5:901351 2.60E-39 wgd
Sed04g2038 Sed-Chr4:34766002 Sed05g0150 Sed-Chr5:901351 3.30E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79117 PF00069 Pkinase 4.00E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0150 - - - 0.0