Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0155 ATGGCCGAAATCGCCTGCTCCGCAGCCGACCTCGGCCAACTCCTTGGCGGCTCGGCCAACGCCACCGCGGTCGCCGACTACATCTGCGGTCGGTTCGACGCGGTCTCGACCAAGTTCGTGGACACGACGTATGCTGTTGACAACACTTACCTTTTGTTTTCAGCGTACCTTGTTTTTGCAATGCAGCTTGGATTTGCAATGCTTTGTGCGGGTTCTGTTAGGGCTAAAAACACAATGAATATTATGCTGACTAATGTTCTTGATGCTGCCACTGGCGGAATATTTTATTATTTGTTTGGGTTTGCCTTGGCGTTTGGAACTCCCTCTAATGGCTTCATTGGTCGCCATTATTTTGGGCTCTCACAGTTTCCTTCTTCTTCGTTTGATTATGGCTTCTTTCTGTTTCAATGGGCTTTCGCCATTGCGGCTGCAGGCATTACTAGTGGCTCGATCGCGGAACGGACCCGGTTCGTCGCTTATTTGATCTATTCCTCGGTCTTGACCGGTTTGGTTTATCCAATTGTGGCTCATTGGTTTTGGTCTGCGGACGGGTGGGGCAGCGCAGCTCGATCAGAAAATCTCCTCTTTGGCTCAGGAGTGATCGACTTCGCTGGCTCGGGTGTGGTTCACATGGTCGGCGGAATCGCCGGTTTATGGGGTGCTATCATAGAAGGCCCACGAATCGGCCGGTTCGACCATGCAGGCCGGTCCGTCGCCCTCCGCGGCCACAGCGGCACATTAGTAGTCCTCGGCACATTCCTCCTCTGGTTCGGTTGGTACGGCTTCAACCCCGGTTCATTTGTCAACATCCTCAAAGCCTACAACAACACCACCACCACCCCATTTTACGGCCAATGGAGCGCCATTGGCCGAACCGCAGTCACCACCACTCTAGCCGGGTGCACGGCAGCCCTAACCACCCTCTTCGGCAAACGCCTCCTCGTCGGGCACTGGAACGTCACCGACGTATGCAACGGCCTGTTAGGCGGATTCGCCGCCATAACATCCGGATGCTCCGTGGTGGATCCATGGGCCGCGATCGTTTGCGGGTTTTTCGCAGCTTGGGTATTGATAGGGTTCAACAAACTAGCGGAGAGAGTGAAGTACGACGATCCGTTAGAGGCGGCGCAGTTGCATGGGGGATGTGGGGCGTGGGGGATTTTGTTCACAGGCTTGTTTGCCAAACAAGAATATGTTAACGAGATCTATCCCGGGTTGGCGGACCGGCCATACGGGCTGCTGATGGGCGGCGGGGGAAGGCTGTTGGCGGCTCATATGGTTCAAATTTTGTCAATAACAGGTTGGGTTAGTGTGACAATGGGGTTGGTTTTTTGGCTGTTGCATAAATTTCAGTTATTGAGGATAACGGCCGAGGAAGAGACGGCTGGAATGGACTTGACAAGCCATGGTGGATTGGCTTATGTGTATAATGATGAAGAAGAAAAGCCTTATGTTTGA 1458 53.29 MAEIACSAADLGQLLGGSANATAVADYICGRFDAVSTKFVDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYLFGFALAFGTPSNGFIGRHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTRFVAYLIYSSVLTGLVYPIVAHWFWSADGWGSAARSENLLFGSGVIDFAGSGVVHMVGGIAGLWGAIIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFVNILKAYNNTTTTPFYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCSVVDPWAAIVCGFFAAWVLIGFNKLAERVKYDDPLEAAQLHGGCGAWGILFTGLFAKQEYVNEIYPGLADRPYGLLMGGGGRLLAAHMVQILSITGWVSVTMGLVFWLLHKFQLLRITAEEETAGMDLTSHGGLAYVYNDEEEKPYV 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 939671 942409 + Sed0007863.1 Sed05g0155 712781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0155 485 Pfam Ammonium Transporter Family 50 474 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed05g0155 485 PANTHER AMMONIUM TRANSPORTER 36 481 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Sed05g0155 485 NCBIfam ammonium transporter 47 474 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed05g0155 485 Gene3D Ammonium transporter AmtB like domains 28 485 IPR029020 -
Sed05g0155 485 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed05g0155 485 FunFam Ammonium transporter 28 485 - -
Sed05g0155 485 SUPERFAMILY Ammonium transporter 44 455 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0155 Sed-Chr5:939671 Sed11g0662 Sed-Chr11:8674279 3.80E-206 dispersed
Sed01g4255 Sed-Chr1:70843129 Sed05g0155 Sed-Chr5:939671 2.40E-253 wgd
Sed02g1449 Sed-Chr2:50542844 Sed05g0155 Sed-Chr5:939671 5.20E-195 wgd
Sed05g0155 Sed-Chr5:939671 Sed09g0197 Sed-Chr9:1585433 1.60E-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0155 K03320 - csv:101223077 874.774