Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0157 ATGCCTTTCTCGATTGTGCACCTTCTGGTTTTTCATGCGGTCAATTTGGTCTTCTCTTGCTCAGGACAATCTTCGCCGCACATATACTTATCTCCTTCCTTACAGCCTAACCTGGAAACAACAATGACAGAATTGTCAACAGAGCATGCAAGGTCAGAGTCAACGAGTTTTTCATTTATGCCTTCAAAATTACATGGTAACTGGATGTTTAAGTCGTCTTCAGGACCTTCCACTGCTCCTGCACCTTCTCCAGGTCCTAGAAGTACACCCTTACCTCTCCGGCATCATCGGCGGCGGCGTATACGACCTCATATGGCTGCTCCTACCCCATCAAAAGATCAAGGTTGTGATCAAATATGCATGGAGCCCCTTACAGCGGCTCCCTTTGGCTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCATATGCTGTTTTTCCTGTGATGAACGAGCTCGAAATTGAGATTGCAGAGGGAACTTACTTGGAGCAAAGCCAAGTGAAAATCATGGGCGCAAGTGCAGATAGTCAAAACCAAGGAAGAACTATGGTGGACATAAATTTAGTACCTCTGGGAGAGAAGTTTGATAATACCACTGCAGTACTGACTTACAGAAGGTTTTGGGATAAAAAGGTGCATTTAAATGTGACCCTTTTTGGCGATTATGAAGTTGTTTACATCAGCTATCCAGGGATTCCTTCTTCACCACCCTACGGAGGGTACCTAGGAAGTGCTCCGAGTGGAAATGTTGGAGATCTTCCTATTACTGCAAACTTCGTTAATAAGAGCCAGAAGATGAATGTCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTATTGGTTTTCGTTGGAGCTCTTTCTGTCTTTTTTAAATGGAGAAATGTCGGCAGACCGTCTAGTGCTGTCGGCCCCGTCTTCCCATCGTCAATTAACAAAAAATCTGGTCTAGGATCAGCCTTATCAAGTAGCATTGCCAGCTCCACATCGGTTTCCTTAATTTCCACAATGCCAACCAGTCTTCTTCGATCTGTTAAAGCATTTGTTCTTTCTGAACTTGAGAAAGCAACAGATAAGTTTAGTTCGAAAAGGATTTTAGGCGAAGGGGGATTTGGACGAGTCTACTTTGGTCTTTTGGAAGATGGAAATGAAGTTGCAGTTAAGTTGCTTACACGGGAAAATCAGAATAGAGACCGTGAATTTATAGCAGAAGTTGAGATGTTGAGTAGACTGCACCATCGGAATCTTGTGAAGCTGATTGGGATATGTATCGATGGGCGCACTCGTTGCTTAGTTTATGAGCTTGTCCATAATGGCAGTGTTGAGTCCCACTTGCATGGCATTGACAAGAGAAAAGGACCTCTTGACTGGGATGCACGATTAAAGATCGCTCTTGGAACAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCCCGTGTAATTCATCGCGATTTCAAAACTAGTAATGTTCTGTTGGAAGTTGACTTCACCCCCAAGGTTTCGGATTTTGGATTGGCTAGGGAGGCAACTGAAGGAAGTGAACATATCTCAACGCGGGTCATGGGAACTTTCGGGTACGTAGCCCCTGAATATGCAATGACAGGGCACCTTCTTGTCAAGAGTGATGTTTACAGCTATGGAGTCGTGCTACTTGAGCTTCTTTCAGGAAGAAAACCGGTGGACATGTCTCAACCACATGGCGGGGAGAACCTCGTAACGTGGGCTCGGCCACTACTGACCAGTAGAGAAGGTTTGGAGCAACTAGTAGACCCTTCTCTAGCTGGTGGTAGTTACGACTTCGATGACATGGCCAAGGTGGCCGCCATTGCTTCCATGTGCGTTCATCCAGAGGTGACCCAGAGGCCATTTATGGGAGAAGTTGTGCAGGCTCTAAAGCTGATATACAACGACACAGACGAAACGTGCGCAGACTACTGCAGTCCAAAGGAGTCCTCTGCTTGGGATTCGGATTTCAAAGGTGACCCTATGCCATCAGATAACAGTTGGTGGAATGCAGGTGGTCTCACGCCTCGACTAACATTCGGACAAGCCTCTTCCTTCATCACCATGGAATACAGCTCTGGCCCCCTTGATGATATGGAAAACAGACCGTTTTCAACTTCAAGTTTGGTAGGCGACGAGATATCTTTGCCCATTCGGCATGGAAACAGGTCAGGTCCCTTACGAACCGCTCGAAGCAAGCCTGCCTTCTACAGATTTTCAGGAAGCAGGAGCGAGCACGGAGGACTTCTTTCAAGGCCTTCTTGGAACAACGCATTTTGGATTTAA 2322 45.82 MPFSIVHLLVFHAVNLVFSCSGQSSPHIYLSPSLQPNLETTMTELSTEHARSESTSFSFMPSKLHGNWMFKSSSGPSTAPAPSPGPRSTPLPLRHHRRRRIRPHMAAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELEIEIAEGTYLEQSQVKIMGASADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNVTLFGDYEVVYISYPGIPSSPPYGGYLGSAPSGNVGDLPITANFVNKSQKMNVKTIAIIALSAFVVLLVFVGALSVFFKWRNVGRPSSAVGPVFPSSINKKSGLGSALSSSIASSTSVSLISTMPTSLLRSVKAFVLSELEKATDKFSSKRILGEGGFGRVYFGLLEDGNEVAVKLLTRENQNRDREFIAEVEMLSRLHHRNLVKLIGICIDGRTRCLVYELVHNGSVESHLHGIDKRKGPLDWDARLKIALGTARGLAYLHEDSNPRVIHRDFKTSNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGGENLVTWARPLLTSREGLEQLVDPSLAGGSYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSPKESSAWDSDFKGDPMPSDNSWWNAGGLTPRLTFGQASSFITMEYSSGPLDDMENRPFSTSSLVGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGLLSRPSWNNAFWI 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 952259 958984 + Sed0012162.1 Sed05g0157 712783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0157 773 CDD STKc_IRAK 375 645 - -
Sed05g0157 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0157 773 PANTHER OS01G0750732 PROTEIN 118 663 IPR050885 -
Sed05g0157 773 Pfam Protein tyrosine and serine/threonine kinase 372 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g0157 773 ProSiteProfiles Protein kinase domain profile. 369 645 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g0157 773 FunFam receptor-like serine/threonine-protein kinase ALE2 341 444 - -
Sed05g0157 773 Gene3D Phosphorylase Kinase; domain 1 343 444 - -
Sed05g0157 773 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524(InterPro)
Sed05g0157 773 SUPERFAMILY Protein kinase-like (PK-like) 349 645 IPR011009 -
Sed05g0157 773 MobiDBLite consensus disorder prediction 71 95 - -
Sed05g0157 773 Gene3D Transferase(Phosphotransferase) domain 1 445 663 - -
Sed05g0157 773 FunFam Receptor-like serine/threonine-protein kinase ALE2 445 660 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0157 Sed-Chr5:952259 Sed12g1762 Sed-Chr12:28729590 3.00E-173 dispersed
Sed05g0157 Sed-Chr5:952259 Sed05g0158 Sed-Chr5:952259 0.00E+00 tandem
Sed12g0493 Sed-Chr12:2921899 Sed05g0157 Sed-Chr5:952259 6.60E-75 transposed
Sed01g4251 Sed-Chr1:70822313 Sed05g0157 Sed-Chr5:952259 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79118 PF00069 Pkinase 1.70E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0157 - - - 0.0