Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0178 | ATGGCGGTTTCTCTCAGACTTCTCCTCCTTCTTCTTTTCAACTTCCTCTTCGTTCATTTCAGTTTTGCCGGAGACGGGAGGTTTCAGAGCTTCAATTCTTCATCAATGGCGGACCGGTATATTAAGAATGAACATGCTGTTGATAATCCAGAGGAAATTGCATCACTGGTTGAATCGAGCATTCGCAACAGCACAGAGAGAAGAAACCTAGGGTTCTTCTCCTGCGGAACCGGAAACCCAATCGACGATTGCTGGCGGTGCGATCCCCGGTGGCAGCTCCGCCGCAAAACCCTAGCAAACTGCGGCATCGGATTCGGCCGCAACGCCGTGGGCGGCCGCGACGGCAAATACTACGTCGTCTCAAACCCCAGAGACGACGACCCAGTCAATCCCAAACCAGGAACGCTCCGCCACGCCGTGATCCAAGACAAGCCCCTATGGATCGTGTTCAAATCCGACATGGTCATAACTCTGAAGCAAGAACTCATCATGAACAGCTTCAAGACCATCGACGCCCGCGGAGCCAACGTCCACATTGCCTATGGTGCGTGTATTACCATTCAATTCGTTACCAATGTGATTATCCATGGCTTGCATATTCATGATTGTAAGCCGACTGGCAATGCCATGGTGCGAAGCTCCCCTGGTCATTATGGATGGCGGACCATGGCGGATGGGGACGGGATTTCGATCTTCGGGTCGAGCCATGTTTGGATTGATCATAATTCGCTTTCTAATTGTGCTGATGGGCTTATTGATGCTATTATGGGATCTACTGCTATTACGATTTCGAATAACTACTTTACTCATCATAATGAGGTGATGCTTTTGGGACATAGTGATTCTTATGTTAGAGATAAGCAAATGCAAGTCACTATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATCGGTGGAAGTGCTAATCCCACCATTAACAGCCAAGGCAACAGATATCTTGCCCCTGTCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTCGGCTCGTGGAACGGCGTATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCCGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCTTCAAGCTTGGGAGCTAAATCTTCTTCGTTGGTGGGCTCCCTCACTTCAAATGCAGGTGCTCTTTCTTGTCGTAGAGGATACCGTTGTTAA | 1284 | 48.29 | MAVSLRLLLLLLFNFLFVHFSFAGDGRFQSFNSSSMADRYIKNEHAVDNPEEIASLVESSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKTLANCGIGFGRNAVGGRDGKYYVVSNPRDDDPVNPKPGTLRHAVIQDKPLWIVFKSDMVITLKQELIMNSFKTIDARGANVHIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPGHYGWRTMADGDGISIFGSSHVWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVGSWNGVWKHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSLTSNAGALSCRRGYRC | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1087714 | 1093357 | - | Sed0026041.1 | Sed05g0178 | 712804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0178 | 427 | SUPERFAMILY | Pectin lyase-like | 57 | 422 | IPR011050 | - | |
Sed05g0178 | 427 | Gene3D | - | 78 | 420 | IPR012334 | - | |
Sed05g0178 | 427 | PRINTS | Pollen allergen Amb family signature | 305 | 324 | IPR018082 | - | |
Sed05g0178 | 427 | PRINTS | Pollen allergen Amb family signature | 369 | 393 | IPR018082 | - | |
Sed05g0178 | 427 | PRINTS | Pollen allergen Amb family signature | 327 | 346 | IPR018082 | - | |
Sed05g0178 | 427 | PRINTS | Pollen allergen Amb family signature | 398 | 421 | IPR018082 | - | |
Sed05g0178 | 427 | PRINTS | Pollen allergen Amb family signature | 125 | 150 | IPR018082 | - | |
Sed05g0178 | 427 | PRINTS | Pollen allergen Amb family signature | 225 | 246 | IPR018082 | - | |
Sed05g0178 | 427 | PRINTS | Pollen allergen Amb family signature | 101 | 118 | IPR018082 | - | |
Sed05g0178 | 427 | PRINTS | Pollen allergen Amb family signature | 161 | 177 | IPR018082 | - | |
Sed05g0178 | 427 | PANTHER | PECTATE LYASE 18-RELATED | 19 | 424 | IPR045032 | GO:0030570(InterPro) | |
Sed05g0178 | 427 | SMART | amb_all | 153 | 350 | IPR002022 | - | |
Sed05g0178 | 427 | FunFam | Pectate lyase | 78 | 420 | - | - | |
Sed05g0178 | 427 | Pfam | Pectate lyase | 170 | 342 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g0178 | Sed-Chr5:1087714 | Sed12g0409 | Sed-Chr12:2470045 | 1.10E-190 | dispersed | |
Sed01g4237 | Sed-Chr1:70681923 | Sed05g0178 | Sed-Chr5:1087714 | 1.80E-228 | wgd | |
Sed02g1468 | Sed-Chr2:50689600 | Sed05g0178 | Sed-Chr5:1087714 | 4.90E-192 | wgd | |
Sed04g2044 | Sed-Chr4:34840872 | Sed05g0178 | Sed-Chr5:1087714 | 6.00E-190 | wgd | |
Sed05g0178 | Sed-Chr5:1087714 | Sed09g0193 | Sed-Chr9:1553900 | 5.50E-193 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0178 | K01728 | - | csv:101207204 | 798.89 |