Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0178 ATGGCGGTTTCTCTCAGACTTCTCCTCCTTCTTCTTTTCAACTTCCTCTTCGTTCATTTCAGTTTTGCCGGAGACGGGAGGTTTCAGAGCTTCAATTCTTCATCAATGGCGGACCGGTATATTAAGAATGAACATGCTGTTGATAATCCAGAGGAAATTGCATCACTGGTTGAATCGAGCATTCGCAACAGCACAGAGAGAAGAAACCTAGGGTTCTTCTCCTGCGGAACCGGAAACCCAATCGACGATTGCTGGCGGTGCGATCCCCGGTGGCAGCTCCGCCGCAAAACCCTAGCAAACTGCGGCATCGGATTCGGCCGCAACGCCGTGGGCGGCCGCGACGGCAAATACTACGTCGTCTCAAACCCCAGAGACGACGACCCAGTCAATCCCAAACCAGGAACGCTCCGCCACGCCGTGATCCAAGACAAGCCCCTATGGATCGTGTTCAAATCCGACATGGTCATAACTCTGAAGCAAGAACTCATCATGAACAGCTTCAAGACCATCGACGCCCGCGGAGCCAACGTCCACATTGCCTATGGTGCGTGTATTACCATTCAATTCGTTACCAATGTGATTATCCATGGCTTGCATATTCATGATTGTAAGCCGACTGGCAATGCCATGGTGCGAAGCTCCCCTGGTCATTATGGATGGCGGACCATGGCGGATGGGGACGGGATTTCGATCTTCGGGTCGAGCCATGTTTGGATTGATCATAATTCGCTTTCTAATTGTGCTGATGGGCTTATTGATGCTATTATGGGATCTACTGCTATTACGATTTCGAATAACTACTTTACTCATCATAATGAGGTGATGCTTTTGGGACATAGTGATTCTTATGTTAGAGATAAGCAAATGCAAGTCACTATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATCGGTGGAAGTGCTAATCCCACCATTAACAGCCAAGGCAACAGATATCTTGCCCCTGTCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTCGGCTCGTGGAACGGCGTATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCCGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCTTCAAGCTTGGGAGCTAAATCTTCTTCGTTGGTGGGCTCCCTCACTTCAAATGCAGGTGCTCTTTCTTGTCGTAGAGGATACCGTTGTTAA 1284 48.29 MAVSLRLLLLLLFNFLFVHFSFAGDGRFQSFNSSSMADRYIKNEHAVDNPEEIASLVESSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKTLANCGIGFGRNAVGGRDGKYYVVSNPRDDDPVNPKPGTLRHAVIQDKPLWIVFKSDMVITLKQELIMNSFKTIDARGANVHIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPGHYGWRTMADGDGISIFGSSHVWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVGSWNGVWKHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSLTSNAGALSCRRGYRC 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1087714 1093357 - Sed0026041.1 Sed05g0178 712804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0178 427 SUPERFAMILY Pectin lyase-like 57 422 IPR011050 -
Sed05g0178 427 Gene3D - 78 420 IPR012334 -
Sed05g0178 427 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Sed05g0178 427 PRINTS Pollen allergen Amb family signature 369 393 IPR018082 -
Sed05g0178 427 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Sed05g0178 427 PRINTS Pollen allergen Amb family signature 398 421 IPR018082 -
Sed05g0178 427 PRINTS Pollen allergen Amb family signature 125 150 IPR018082 -
Sed05g0178 427 PRINTS Pollen allergen Amb family signature 225 246 IPR018082 -
Sed05g0178 427 PRINTS Pollen allergen Amb family signature 101 118 IPR018082 -
Sed05g0178 427 PRINTS Pollen allergen Amb family signature 161 177 IPR018082 -
Sed05g0178 427 PANTHER PECTATE LYASE 18-RELATED 19 424 IPR045032 GO:0030570(InterPro)
Sed05g0178 427 SMART amb_all 153 350 IPR002022 -
Sed05g0178 427 FunFam Pectate lyase 78 420 - -
Sed05g0178 427 Pfam Pectate lyase 170 342 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0178 Sed-Chr5:1087714 Sed12g0409 Sed-Chr12:2470045 1.10E-190 dispersed
Sed01g4237 Sed-Chr1:70681923 Sed05g0178 Sed-Chr5:1087714 1.80E-228 wgd
Sed02g1468 Sed-Chr2:50689600 Sed05g0178 Sed-Chr5:1087714 4.90E-192 wgd
Sed04g2044 Sed-Chr4:34840872 Sed05g0178 Sed-Chr5:1087714 6.00E-190 wgd
Sed05g0178 Sed-Chr5:1087714 Sed09g0193 Sed-Chr9:1553900 5.50E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0178 K01728 - csv:101207204 798.89