Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0197 ATGGTTGGCAGCAGAATCTTCAGTTTGGCTGAGGTTGCCTCCCACGACAATCCCAATGATTGCTGGTTGATCATTGAGGACAAGGTGTATGATGTAACAAAATTCCTGGAAGACCATCCTGGTGGTGATGAAGTTTTGCTGTCAGGAGTTGGTAAGGATGCAACCAATGATTTTTTCGATGTCGGGCACAGTAGCACTGCAAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACCATTCCCGCCACAAGAAAGTACACTCCTCCAAAACAGCCTCTATACAACCAAGACAAGACAACAGAATTTGTCATCAAGGTCCTCCAATTTCTAGCTCCCCCACTAATTTTGGGTTTGGCTTTTGGCATCCACCTCTATACCAAAGCAGCTTAA 402 45.02 MVGSRIFSLAEVASHDNPNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSTARAMMEEFYVGDIDSSTIPATRKYTPPKQPLYNQDKTTEFVIKVLQFLAPPLILGLAFGIHLYTKAA 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1203376 1205793 - Sed0004987.1 Sed05g0197 712823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0197 133 PANTHER CYTOCHROME B5 5 116 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Sed05g0197 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 79 IPR001199 -
Sed05g0197 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037(InterPro)
Sed05g0197 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Sed05g0197 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 92 IPR036400 -
Sed05g0197 133 Gene3D - 3 83 IPR036400 -
Sed05g0197 133 SMART Cyt_b5_2 7 80 IPR001199 -
Sed05g0197 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Sed05g0197 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Sed05g0197 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Sed05g0197 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Sed05g0197 133 FunFam Cytochrome b5 type B 2 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0197 Sed-Chr5:1203376 Sed12g0390 Sed-Chr12:2347770 5.20E-49 dispersed
Sed05g0197 Sed-Chr5:1203376 Sed05g0198 Sed-Chr5:1203376 5.70E-56 tandem
Sed02g1490 Sed-Chr2:50846964 Sed05g0197 Sed-Chr5:1203376 1.80E-49 wgd
Sed04g2056 Sed-Chr4:34967221 Sed05g0197 Sed-Chr5:1203376 5.40E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0197 K23490 - csv:101212882 243.817