Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0198 ATGTTACTGATTAAGTTTGGCTTGATTTCAATTTCTTTTTGTTCATTTTCTTTAATCCTACAGGTGTATGATGTAACAAAATTCCTGGAAGACCATCCTGGTGGTGATGAAGTTTTGCTGTCAGGAGTTGGTAAGGATGCAACCAATGATTTTTTCGATGTCGGGCACAGTAGCACTGCAAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACCATTCCCGCCACAAGAAAGTACACTCCTCCAAAACAGCCTCTATACAACCAAGACAAGACAACAGAATTTGTCATCAAGGTCCTCCAATTTCTAGCTCCCCCACTAATTTTGGGTTTGGCTTTTGGCATCCACCTCTATACCAAAGCAGCTTAA 381 41.21 MLLIKFGLISISFCSFSLILQVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSTARAMMEEFYVGDIDSSTIPATRKYTPPKQPLYNQDKTTEFVIKVLQFLAPPLILGLAFGIHLYTKAA 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1203376 1205793 - Sed0004987.2 Sed05g0198 712824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0198 126 PANTHER CYTOCHROME B5 21 109 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Sed05g0198 126 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 21 73 IPR001199 -
Sed05g0198 126 SMART Cyt_b5_2 11 73 IPR001199 -
Sed05g0198 126 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 28 35 IPR018506 GO:0020037(InterPro)
Sed05g0198 126 Gene3D - 11 76 IPR036400 -
Sed05g0198 126 Pfam Cytochrome b5-like Heme/Steroid binding domain 21 72 IPR001199 -
Sed05g0198 126 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 21 85 IPR036400 -
Sed05g0198 126 PRINTS Cytochrome B5 signature 32 46 IPR001199 -
Sed05g0198 126 PRINTS Cytochrome B5 signature 60 72 IPR001199 -
Sed05g0198 126 PRINTS Cytochrome B5 signature 22 32 IPR001199 -
Sed05g0198 126 PRINTS Cytochrome B5 signature 47 54 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0198 Sed-Chr5:1203376 Sed12g0390 Sed-Chr12:2347770 2.70E-39 dispersed
Sed05g0197 Sed-Chr5:1203376 Sed05g0198 Sed-Chr5:1203376 5.70E-56 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0198 K23490 - csv:101212882 198.364