Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0212 ATGGGGGAGGGCTTGTCTGACCCCGCAAAGCAGGCCGAGCTGCTCAGAAAAGATGGAAACCTCTATTTCCAGAAGGGCCGAATTGGAGCCGCCATTGATGCCTACACCGAGGCAATTACGTTGTGCCCGAATGTTCCTGTGTATTTGACGAACCGTGCTTTGTGTCATCGCAAGAGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTCGATAGCAACTCTGTCAAGGCACATTATATGCTAGGACTAGCATTAGTACAAAATAAAGTATATCCACAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTCGGGGTGCAAATCCAAAGAGTTATATGGTAGAGGAGATATGGCAGGAGCTTGCAAAAGCAAAATACAGAGAGTGGGAAAAAGCATCCACCGAACGTTCATGGGAATTGCAGAGCTTGAAAGAGGCCTGTGAAGCTGCCCTGGAACAAAAATATTTTCTTGAGCAGTCTGATCCAGAAGGGTTCGTAGATGAAACCGAAATTGCTCATCAGCTACAATTGAAGTCTCTAAGAAGCCTGTTTGAAGAAGTCGCATTGACGGATGCGCCGTCTGAGGTGCCTGATTATCTTTGTTGTAAAATTACACTCGATATTCTCCGTGATCCTGTCATTACTCCGAGTGGGGTTACATATGAGAGAGCAGTGATTCTCGATCACTTTCAAAAGGTGGGTAACTTCGATCCCATAACGCGGGAACGGCTTAACGAGTCGCAGCTAGTACCAAACTTGGCCATAAAGGAAGCAGTACAAGCGTTTCTAGATAAGCATGGATGGGCTTATAATACAGAGTAA 840 46.07 MGEGLSDPAKQAELLRKDGNLYFQKGRIGAAIDAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDSNSVKAHYMLGLALVQNKVYPQGIKHLEKALDLGRGANPKSYMVEEIWQELAKAKYREWEKASTERSWELQSLKEACEAALEQKYFLEQSDPEGFVDETEIAHQLQLKSLRSLFEEVALTDAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFQKVGNFDPITRERLNESQLVPNLAIKEAVQAFLDKHGWAYNTE 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1285891 1290580 + Sed0023145.1 Sed05g0212 712838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0212 279 Pfam Tetratricopeptide repeat 19 44 IPR019734 GO:0005515(InterPro)
Sed05g0212 279 SMART tpr_5 80 113 IPR019734 GO:0005515(InterPro)
Sed05g0212 279 SMART tpr_5 12 45 IPR019734 GO:0005515(InterPro)
Sed05g0212 279 SMART tpr_5 46 79 IPR019734 GO:0005515(InterPro)
Sed05g0212 279 SMART Ubox_2 205 268 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0212 279 ProSiteProfiles TPR repeat profile. 12 45 IPR019734 GO:0005515(InterPro)
Sed05g0212 279 SUPERFAMILY TPR-like 10 133 IPR011990 GO:0005515(InterPro)
Sed05g0212 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 278 IPR013083 -
Sed05g0212 279 Pfam Anaphase-promoting complex, cyclosome, subunit 3 48 106 - -
Sed05g0212 279 CDD RING-Ubox_CHIP 202 272 IPR045202 -
Sed05g0212 279 ProSiteProfiles U-box domain profile. 201 275 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0212 279 Gene3D Tetratricopeptide repeat domain 6 142 IPR011990 GO:0005515(InterPro)
Sed05g0212 279 SUPERFAMILY RING/U-box 198 276 - -
Sed05g0212 279 Pfam U-box domain 202 274 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0212 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 2 277 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0212 Sed-Chr5:1285891 Sed12g1341 Sed-Chr12:10260746 1.90E-08 dispersed
Sed01g4160 Sed-Chr1:70357988 Sed05g0212 Sed-Chr5:1285891 3.20E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0212 K09561 - csv:101215457 504.212