Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0213 ATGGCGAAAACCGGCGTGTTTGATTCTAACCCTACGGTTATGGGGAAGGCGACGGAGTTGAAGAAGGAGTTGCAGAGGCTCATCGTTGCGATTATTGACGATGATAATTTCTCCACCGACACTGTCGATCATGCTGAGGAGATTCTTTGTGCGCTCAAGGAATTGAAGCTCCGCAAGAGATTGCGCTCTTCGAATCAGTTGGAGAATCTCATTTGCCCCGAGGAATTTCGTTGTCCGCTTTCTCGAGAGCTCATGAGAGATCCTGTTGTTGTCTCTACTGGCCAGACATACGACAGACCCTTCATTAAAAAATGGTTAAAATCAGGAAACCGAACGTGTCCCAGAACTCAGCAAGTTCTTTCGCACTCGAATCTCACTCCCAATCACTTGATTCGTGAAATGATATCTCGGTGGTGTACAAGTCGGGGAGTTGAATTGCCGGATAGTGTTCATTATCTCGATGATGATGTAATAACGGAGGCTGATAGAGATCGTTTTCTTACGTTAATAGAGAAAATGTCTACGACAATATCTGAACAAAAAACTGCTGCTAAGGAGCTTCGGATGTTGACGAAGCGAATGCCATCTTTTCGAGCACTTTTTGGCGAGTCCCTTGATGCCATCTCTTTGTTGCTTGGTCCACTTTGTGGAGACAAGTCACAAAATAGTATTCACGGAGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATCTGTCAATCCATGACAACAACAAGAAGCTTGTTGCTGAAACTCCCAAGGTAGTACCTCTTCTAATGGAAGCATTGCGATCGGGAACCATGGAAACAAGGAGCAACGCAGCTGCAGCTCTATTTACTTTATCAGCTCTCGACTCAAACAAAGCACTCATTGGGAAAGCTGGTGCCTTGAAACTGCTTATCGACCTTCTAGATGAGGGGCATCCATTATCTATCAAAGATGCTGCTTCAGCAATATTTAATCTTTGTATACTTCATGAAAACAAAGCAAGAGCTGTGCGAGATGGTGCAGTTCGAGTGCTTCTGAGAAAGATCATGAACCAAATGCACATTGATGAGTTGTTGGCAATTCTCGCAATGCTTTCTAACCATCCAAAAGCTATCGAGGAAATGGGAGAACTCGGAGCTGTTTCTATCTTGCTCAGAATTATCAGGGAAGGTGCTTGTTCGCGTAACAAGGAGAATTGCATTGTGATCATTCATGCTATATGCTTATACGATCGAACCACGTGGAAGGACATGAGGGAGGAGGAGAAATGCTATCGAACTATCTCGGAACTCGCTCAGAATGGGACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTTGAAAGACTGAACAGGGTTAATGTGACCCATACGGCATAA 1368 44.59 MAKTGVFDSNPTVMGKATELKKELQRLIVAIIDDDNFSTDTVDHAEEILCALKELKLRKRLRSSNQLENLICPEEFRCPLSRELMRDPVVVSTGQTYDRPFIKKWLKSGNRTCPRTQQVLSHSNLTPNHLIREMISRWCTSRGVELPDSVHYLDDDVITEADRDRFLTLIEKMSTTISEQKTAAKELRMLTKRMPSFRALFGESLDAISLLLGPLCGDKSQNSIHGDLQEDVITTLLNLSIHDNNKKLVAETPKVVPLLMEALRSGTMETRSNAAAALFTLSALDSNKALIGKAGALKLLIDLLDEGHPLSIKDAASAIFNLCILHENKARAVRDGAVRVLLRKIMNQMHIDELLAILAMLSNHPKAIEEMGELGAVSILLRIIREGACSRNKENCIVIIHAICLYDRTTWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRVNVTHTA 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1295405 1298681 - Sed0001691.1 Sed05g0213 712839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0213 455 CDD RING-Ubox_PUB 73 125 IPR045210 -
Sed05g0213 455 SMART arm_5 242 283 IPR000225 GO:0005515(InterPro)
Sed05g0213 455 SMART arm_5 284 324 IPR000225 GO:0005515(InterPro)
Sed05g0213 455 SMART arm_5 364 405 IPR000225 GO:0005515(InterPro)
Sed05g0213 455 SMART Ubox_2 75 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0213 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 145 IPR013083 -
Sed05g0213 455 Pfam Armadillo/beta-catenin-like repeat 286 323 IPR000225 GO:0005515(InterPro)
Sed05g0213 455 Gene3D - 352 451 IPR011989 -
Sed05g0213 455 Gene3D - 178 351 IPR011989 -
Sed05g0213 455 FunFam RING-type E3 ubiquitin transferase 156 452 - -
Sed05g0213 455 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g0213 455 SUPERFAMILY ARM repeat 178 446 IPR016024 -
Sed05g0213 455 PANTHER U BOX DOMAIN-CONTAINING 42 448 - -
Sed05g0213 455 SUPERFAMILY RING/U-box 71 148 - -
Sed05g0213 455 FunFam RING-type E3 ubiquitin transferase 71 145 - -
Sed05g0213 455 Pfam U-box domain 73 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4162 Sed-Chr1:70369856 Sed05g0213 Sed-Chr5:1295405 2.20E-133 dispersed
Sed05g0213 Sed-Chr5:1295405 Sed11g0693 Sed-Chr11:9634540 9.00E-77 dispersed
Sed01g4161 Sed-Chr1:70369856 Sed05g0213 Sed-Chr5:1295405 1.40E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0213 K27971 - csv:101215688 743.421