Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0219 ATGCTTGATTCAATCTTCTTTTTCTTCTTCATTCTCTTTGCTCCCTGCAAATCTTCTGTAATTTCCGTCCCTGGTCGGAGAATTCTTCACCAGCCTTTTTTCCCGATTGATTCTGCGCCGCCGGCGGAACCACCGTCGCCGCCGCTGCCCTCACCGCCGAATCCCAAATACCCATTCTCCACTACCCCTCCGGCAACTCCCGATGGGTCTCCATTCTTTCCGACGTACCCAGCAGCCCCTCCTCCTCCGACGCCGGCCAGCATTGCATCGTTTCCGGCGAATATTTCTACTCTAACCCTCCCTACTTCGTCTCCGTCTAGTTCCAGTTCCAAGAAGCTTGTTCCGGTTGCCGTTGCGGCGGTTGTTTCTGCTGTTTTGGTCTTCTGCATTGCCGGGATTTTGTGCCGGCGCCGGCGCCGGAGTCGGTTGGTCGATGACAAGACGTTCAGATCTGAAAACAGTAGCCGGTTGTGTCCGGTGAGTGTTGAAGCCGGTAATGGAATCCCTAAGTTGAGAAATCCTTCAGCTACTAGCTCTGAGTTTCTGTATTTAGGTACACTTGTGAACTCGAGAGGAATCGACGATCGTTCCGGAGCTCGCGTGGCGGATTCTAGGCCGTTGGATTCGCCGGAGCTTCATCCGCTTCCGCCGCTGAACTTCGGCCGGTCGGTTGAGAAGCAAAACTACGGAAATGGAGTAGCGAAATCGATCGGAGATGAAGAGGAAGAGGAATTTTACTCTCCGAAAGGCTCGATCGGCGCTAATGGCTCCGGATCTCGGAGAGTGTTCGCAACAATGGCGGCTGAAGATTTGCTTGCCAAAACCAGCGATTCGAGTTCCTCTTCGTATTCCACTTCCAGCGGTTCCGTTTCTCCGGCGAGATCCCGTTCTAAGAGCCTCTCTCTTTCTCCGCCAGCGAGCTTGAGCCCTAGAAAATCTGTTTCTGCAACTGTAGCGACGAAGGGGCATTCGCCGCCGTCAACGCCGCCGCGAGTGGAATCCGACGACGGCGGAAAATCTCATTGTCCATCTCCGATGCGTTTATCGACGGAGAAACTGCCGGAGAAAAGCTCCACCGCATCTTCTTCACGGCGATTCTCGAATTTTTCAGTTCATAGCGCGATGTTTCCGATTTCAACAACCGATGAGTATTTGGATAATCGCGATGAAACGAACAAGAATGACGAAGAAGAATCTCAGTTTCGATCTTCTCCTTGTTTATCCCCAATTTCAGAGGGAATTTTAGGGCAAAATCAGATTCAATTACCGACAGTTTCAAACGTTCTTAATTCTGATTCTGATGCAAAATATAAGCAGCTTCCTTACTCATTTACTTCATCTTCACCTTCATCGTCGCCGGAGAGAGCTTCCATGATTACGGATCATCGTAGGTCGTCTCCGCCGTCACCGGAGATACTACTAACGAGTGATTCAGATTCTTCAAAGAGAACTTTGCTATCTCGTTCGAGTACATCCGCCGCTCCTCCTCCGCCTCCACCGCCGCCGCCTCCGACTCCGACGCCTATGCAGCCTCCTCCATTAGTGCCTCCAATGAAGCCATTTATAATGGAGAATGTGAACAATGTCTCACCAATTCAACTGCCTTCTTACAAAAGCAATGTTGAATCATTTGAAGATACTCCAAAGCCCAAGTTGAAGCCATTGCATTGGGATAAAGTGAGGGCCAGTTCTGATCGTGAGATGGTGTGGGATCAGCTCAGATCAAGCTCTTTTAAGGTGAACGAGGAAATGATTGAAACTTTGTTTGTTGTGAACACTTCTAAGTCGAAGGAGACGACTCCGCGCTCTGTGCTTCCTACACACAATCAAGAGATTGGAGTTCTTGATCCCAAAAAGTCGCAGAACATCGCGATTGCGCTACGGGCGCTTAATGTCACCATAGAAGAAGTTCGTGAAGCCCTTTTAGAAGGTAATGCCGAGGCACTTGGAACAGACCTACTTGAAAGTTTATTGAAGATGGCTCCAACAAAAGAAGAAGAACGTAAACTAAAGGCATCCAAGGATATCTCACCTACAAAGCTTGGCCCTGCTGAGAAATTTTTGAAGGCAGTCCTTGATGTTCCTTTTGCATTCAAAAGGGTGGGCGCAATGCTTTGCATCGCAAATTTCGAAGCTGAGATTGAGTATCTAAAGAAATCGTTCAAAAATCTCGAGACTGCGTGTGAGGAATTGAGGAATAGCAGGATGTTCTTAAAACTCTTGGAAGCTGTTCTCAAGACCGGGAATCGCATGAACGTTGGCACCAATCGTGGAGATGCCCACGCCTTCAAACTCGACACACTTCTAAAGCTAGTCGATATCAAGGGTGCAGATGGAAAAACCACTCTTCTGCATTTTGTCGTACAAGAAATCATAAGAAGCGAAGGAGCTCGTCTCTGTAGCACGAGTCAACCACCAAACTCCAACCAGAGCGACGATGTCAGATGCAGGAAACTCGGCTTGCAAGTTGTTTCAGGTCTCGGCTCAGAGCTTGCGAATGTAAAGAAAGCAGCATCAATGGAATTTGATGTGCTCAGTGGCGAGGTCATCAAGCTTTCGAGGGGACTCGACAATATCAGGGAGGCTCTACGTCTAAACGAAGCAGACGGGGCAAACGAAACCACAGAAAGGTTCTCCGAGTCGATGAGCAGATTCTTGAAAATGGCAGAAGAGGAAATCATTAGAGTCCAAGCACATGAAAGTGTTGCATTATCTTTAGTAAAGGAGATTACGGAGTACTTTCATGGAAACTCTGCCAAAGAAGAAGCTCATCCATTTAGAATCTTCGTGGTGGTGAGAGATTTTCTAACAGTTCTGGATGGAGTCTGCAAGGAAGTCGAGATGATAAACGAGAGAACGGTCATAAGTTCGGCACATAAATTTCCAGTTCCAGTGAATCCGACATTACCACAAGCATTTCAAGCTCATCAAAGAGTGCTGAAACACAATTCATCTGATGAAGAAAGTGAATAA 2973 48.0 MLDSIFFFFFILFAPCKSSVISVPGRRILHQPFFPIDSAPPAEPPSPPLPSPPNPKYPFSTTPPATPDGSPFFPTYPAAPPPPTPASIASFPANISTLTLPTSSPSSSSSKKLVPVAVAAVVSAVLVFCIAGILCRRRRRSRLVDDKTFRSENSSRLCPVSVEAGNGIPKLRNPSATSSEFLYLGTLVNSRGIDDRSGARVADSRPLDSPELHPLPPLNFGRSVEKQNYGNGVAKSIGDEEEEEFYSPKGSIGANGSGSRRVFATMAAEDLLAKTSDSSSSSYSTSSGSVSPARSRSKSLSLSPPASLSPRKSVSATVATKGHSPPSTPPRVESDDGGKSHCPSPMRLSTEKLPEKSSTASSSRRFSNFSVHSAMFPISTTDEYLDNRDETNKNDEEESQFRSSPCLSPISEGILGQNQIQLPTVSNVLNSDSDAKYKQLPYSFTSSSPSSSPERASMITDHRRSSPPSPEILLTSDSDSSKRTLLSRSSTSAAPPPPPPPPPPTPTPMQPPPLVPPMKPFIMENVNNVSPIQLPSYKSNVESFEDTPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKVNEEMIETLFVVNTSKSKETTPRSVLPTHNQEIGVLDPKKSQNIAIALRALNVTIEEVREALLEGNAEALGTDLLESLLKMAPTKEEERKLKASKDISPTKLGPAEKFLKAVLDVPFAFKRVGAMLCIANFEAEIEYLKKSFKNLETACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGADGKTTLLHFVVQEIIRSEGARLCSTSQPPNSNQSDDVRCRKLGLQVVSGLGSELANVKKAASMEFDVLSGEVIKLSRGLDNIREALRLNEADGANETTERFSESMSRFLKMAEEEIIRVQAHESVALSLVKEITEYFHGNSAKEEAHPFRIFVVVRDFLTVLDGVCKEVEMINERTVISSAHKFPVPVNPTLPQAFQAHQRVLKHNSSDEESE 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1332627 1337047 - Sed0007364.1 Sed05g0219 712845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0219 990 PANTHER FORMIN-RELATED 7 987 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Sed05g0219 990 MobiDBLite consensus disorder prediction 40 64 - -
Sed05g0219 990 SUPERFAMILY Formin homology 2 domain (FH2 domain) 495 951 - -
Sed05g0219 990 MobiDBLite consensus disorder prediction 440 456 - -
Sed05g0219 990 MobiDBLite consensus disorder prediction 492 519 - -
Sed05g0219 990 Gene3D Formin, FH2 domain 542 950 IPR042201 -
Sed05g0219 990 ProSiteProfiles Formin homology-2 (FH2) domain profile. 542 965 IPR015425 -
Sed05g0219 990 MobiDBLite consensus disorder prediction 273 324 - -
Sed05g0219 990 MobiDBLite consensus disorder prediction 469 491 - -
Sed05g0219 990 Coils Coil 707 734 - -
Sed05g0219 990 MobiDBLite consensus disorder prediction 351 365 - -
Sed05g0219 990 MobiDBLite consensus disorder prediction 273 365 - -
Sed05g0219 990 SMART it6_source 542 954 IPR015425 -
Sed05g0219 990 MobiDBLite consensus disorder prediction 195 258 - -
Sed05g0219 990 MobiDBLite consensus disorder prediction 440 519 - -
Sed05g0219 990 Pfam Formin Homology 2 Domain 546 939 IPR015425 -
Sed05g0219 990 MobiDBLite consensus disorder prediction 380 410 - -
Sed05g0219 990 MobiDBLite consensus disorder prediction 383 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3176 Sed-Chr4:42484752 Sed05g0219 Sed-Chr5:1332627 6.60E-98 dispersed
Sed05g0219 Sed-Chr5:1332627 Sed06g0275 Sed-Chr6:2340117 7.50E-161 dispersed
Sed01g4182 Sed-Chr1:70429283 Sed05g0219 Sed-Chr5:1332627 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0219 K28090 - csv:101211678 827.78