Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0223 ATGTCTCTCCTCAGTAGATTCTTTTACAGAAGACCCCCGGATGGGCTGCTGGAATTTGTTGAACGAGTATATATTTTTGATTCGTGCTTTTCCACTGAAGTATTGCCCGAGGGTATGTACCAAATATATCTACATGAAATCATAAACGAATTACATGAAGAATTCCCAGACTCCTCCTTCCTTGCATTTAATTTTCGCGAAGGAGAGAACAGGAGCCAATTTGCAGAAATGTTGCGGGAGTATGATGTCACTGTGATGGATTATCCTCGACAGTATGAAGGTTGCCCTCTTCTTCCATTGTCTTTAATACAGCACTTCCTCCGTGTTTGTGAAAGTTGGCTTCTGCTTGGTAACCAGCAAAATATCATTCTTCTTCACTGTGAGAGGGGAGGTTGGCCACTCTTGGCATTTCTTTTGGCTAGCTTTTTGATATTTAGAAAATTGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAAGGGTTTTTGCAGCTCTTGTCACCATTAAATCCATTGCCATCTCAGCTCCGCTACCTGCAGTATGTTGCAAGGAGAACTATAGTATCTGAGTGGCCCCCGCCTGAGCGAGCGCTCTCTTTAGATTGTGTAATTATTCGTGGCATTCCCGGTTTTGATTCTCAGAATGGTTGCAGACCAGTTATTCGTATTTTTGGGAGAAATCTTTTTAGTAAGGGCGGGCTTTCCACACAGATGATTTTTTCCATGCCCAAGAAGAACAAGGCCCTCCGTCACTACCGTCAGGCAGACTGTGATGTGATTAAAATCGACGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAATGTTCACATTTGGAATCAGAACCAGAAAGGGAAGTTATGATGTTTCGTATCATGTTCAATACAGCATTTATACGATCAAACATATTGATGCTAGCCTCAGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTACCCAAAAGGGTTTCGAGCTGAGGTTTTGTTTGGGGAGATAGAAAGCATCTCCCCTCCAAGGGCTCCAACCACAATTTTGAATGGCGAAGAGAAAGGTGGACTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGCTGAGTGGCTTGATAGCAATGACGATGTTGCCTTGTGGTTACTTAAGAATCTTTCTGCCTTGAGTGATGTGAAAGAACGGTCAAGATTGCAAAATAAAACAAGTTCATATTCCTCGCCAGTGGATTCTGAGGAGGAAAATAATACGTCTAGCACTGCCGATAGTTCAGATGAAGTATTTGATATCATGACAAAAACTTCAATTGATTCAACTTCAACCAATTTTACAATTCCAACTATGGTACATTCTTCTGAATTATTTTCTGACAAGACTGGTGCTAGCGAAGTGAACATTTTATCAAAGTCGCCTCAAACTCGTGATGAATGTGGAGACAACATCTTTTTAAATAATGAATCTCCACCCTCTTCATCACCTCCACTAACTTCTTCTAGCTTCTCACCCCCTTCTATAAGTTCTTCGATGCCATTGCCACCTATGCCTCCATCTAATCTACCATCTACAAATATTAGTGGGGAACTTGTCTCAAATAAAATGACACCTACCGTTAAAGATATCCCTCCGCCACTGCCACCACCACCACCACCACCTTTTTCTCTATCTCATAATGAACGCCATGTAGAAACTTCCATCACTTCAGACTCGAGCTCCACGACAATGCATGGGATTTCACCTCCACCCCCTCCATCTCAACATCCTAGTAGTAACAATCCTGTTACGACCTCTTTGATTGCTTCACATTCGCTCGTTACTAAATCTTTTAGTGCTCCTCCACCTCCACCTCCTCCTCCTCCTCCAATGTTTCCAAAATCTTCTAGTGCTCCTCCACCTCCCCCGCCTCCAGTTCCAAAATCTTCTAGTGTTCCTCCACCTCCACCTCCACCTCCACCTCCTCCCCCACCTCTACATTCAATTCCAAAATCTTCAAGTGTTCCTCCACCACCACCACCTCCTCCTATTTCGAAGTCTTCTAGTGCTCCTCCACCTCCACCCCCACCTCCTATATCAAAGTCTTCTAGTGCTCTTCCGCCTCCGCCTCCGCCTCCGCCTCCTATATCAAAGTCTTCTAGTGCTCCTCCGCCTCCACCTCCCCCTCCTATATCAAAGTCCATTAGTGCTCCTCCACCTCCACCTCCACCTCCTCTTCCACAATCAAACCGTGGTGTGGCACCAGTACCACCTCCTCCACCACCAAAACCTCCTGGTGTTGAGCTGCCAAGTCAAGGTACTAAATCAACCAGGCCTCCTCCACCTCCTCCACCAACAAAGTCCTTCAATGCTGATCCTACAACAAGTCATGGTGCTACACCAATGCCACCACCGCCCCCTGGATCAAGAGGGTTAAATGTTCCACCACCCCCTCCTTCCGTTGGGAGGGGGAAGACTTCTCTAGGATCAACAACTCAAGGAAGAGGCCGAGTTGCTACGGGAGTTGTAAATACTACTCCAAAGAAAACCACTTTAAAACCATTGCACTGGGTGAAAGTTACTCGTGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAACCAATCAAGGGCTCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGCAGTAAGGGTGGAGGACGACGCGGTTCTAACATCAACAAACCTGAAAAAGTGCAACTGATTGACTTGCGGAGAGCGTATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATTAATTCCGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGATCAGGTTGAAAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGAGTTATACAGGTGACAAAGAAATGCTTGGAAAGTGTGAGCAGTTTTTTCTCGAGCTAATGAAGGTCCCACGAACAGAGTCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCAAGTCAGGTGAATGATTTGAGACATAATTTGAGTACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGAAAAATTGCGTCAGATAATGCAAACAATTCTTACACTGGGAAATGCGTTAAACCAGGGCACTGCTCGAGGCTCTGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCAGACACACGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCCTTGCAGAAAAATTGCCCGAGTTACTTGATTTTGACAAGGACCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAAGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAGCTGCTTCTGAAAATGACGGTGCTGTCTCTGTTGGATTCCAGAAGGTTCTGAAGAATTTTCTTGATACTGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCGGAAGTGGGGAGAAATGCAGATTCATTATCCCAGTACTTCGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATTTTGATAGTCTTCGTTAAGATGTTCAGGAAGTCACGAGAAGAAAATGAAAGGCTGGCTGATGCTGAAAAGAAAAAAATAGAGAAGGAAGCCATGAAAGAACGAAGTTCAGTTAAAGCAAAGTGA 3735 43.8 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPEGMYQIYLHEIINELHEEFPDSSFLAFNFREGENRSQFAEMLREYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNIILLHCERGGWPLLAFLLASFLIFRKLHSGERKTLEIVHREAPKGFLQLLSPLNPLPSQLRYLQYVARRTIVSEWPPPERALSLDCVIIRGIPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMIFSMPKKNKALRHYRQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLASENLDILWDSKERYPKGFRAEVLFGEIESISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGAEWLDSNDDVALWLLKNLSALSDVKERSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDIMTKTSIDSTSTNFTIPTMVHSSELFSDKTGASEVNILSKSPQTRDECGDNIFLNNESPPSSSPPLTSSSFSPPSISSSMPLPPMPPSNLPSTNISGELVSNKMTPTVKDIPPPLPPPPPPPFSLSHNERHVETSITSDSSSTTMHGISPPPPPSQHPSSNNPVTTSLIASHSLVTKSFSAPPPPPPPPPPMFPKSSSAPPPPPPPVPKSSSVPPPPPPPPPPPPPLHSIPKSSSVPPPPPPPPISKSSSAPPPPPPPPISKSSSALPPPPPPPPPISKSSSAPPPPPPPPISKSISAPPPPPPPPLPQSNRGVAPVPPPPPPKPPGVELPSQGTKSTRPPPPPPPTKSFNADPTTSHGATPMPPPPPGSRGLNVPPPPPSVGRGKTSLGSTTQGRGRVATGVVNTTPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKSYTGDKEMLGKCEQFFLELMKVPRTESKLRVFAFKITFSSQVNDLRHNLSTINDATREVKESEKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKLPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELAASENDGAVSVGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFRKSREENERLADAEKKKIEKEAMKERSSVKAK 1244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1370090 1379039 - Sed0017654.1 Sed05g0223 712849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0223 1244 Coils Coil 1119 1146 - -
Sed05g0223 1244 FunFam Formin-like protein 837 1224 - -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 473 843 - -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 891 911 - -
Sed05g0223 1244 SMART PTEN_C2_2 198 338 IPR014020 -
Sed05g0223 1244 SUPERFAMILY Formin homology 2 domain (FH2 domain) 851 1232 - -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 595 613 - -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 563 581 - -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 794 818 - -
Sed05g0223 1244 SMART it6_source 507 1244 IPR015425 -
Sed05g0223 1244 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Sed05g0223 1244 Pfam Formin Homology 2 Domain 841 1212 IPR015425 -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 891 905 - -
Sed05g0223 1244 Gene3D Protein tyrosine phosphatase superfamily 16 192 IPR029021 -
Sed05g0223 1244 PANTHER FORMIN-J 643 1236 IPR051144 -
Sed05g0223 1244 PRINTS Proline rich extensin signature 632 657 - -
Sed05g0223 1244 PRINTS Proline rich extensin signature 536 557 - -
Sed05g0223 1244 PRINTS Proline rich extensin signature 585 602 - -
Sed05g0223 1244 PRINTS Proline rich extensin signature 492 508 - -
Sed05g0223 1244 PRINTS Proline rich extensin signature 519 531 - -
Sed05g0223 1244 ProSiteProfiles Formin homology-2 (FH2) domain profile. 838 1238 IPR015425 -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 614 764 - -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 473 511 - -
Sed05g0223 1244 Pfam C2 domain of PTEN tumour-suppressor protein 198 338 IPR014020 -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 771 785 - -
Sed05g0223 1244 Gene3D - 197 342 - -
Sed05g0223 1244 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 187 IPR029021 -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 405 432 - -
Sed05g0223 1244 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Sed05g0223 1244 Gene3D Formin, FH2 domain 838 1223 IPR042201 -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 1217 1244 - -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 820 843 - -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 544 560 - -
Sed05g0223 1244 Coils Coil 1215 1235 - -
Sed05g0223 1244 MobiDBLite consensus disorder prediction 403 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0223 Sed-Chr5:1370090 Sed13g1968 Sed-Chr13:24532389 5.60E-254 dispersed
Sed05g0223 Sed-Chr5:1370090 Sed01g2329 Sed-Chr1:17594475 1.10E-206 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0223 K28090 - csv:101217517 956.436