Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0223 | ATGTCTCTCCTCAGTAGATTCTTTTACAGAAGACCCCCGGATGGGCTGCTGGAATTTGTTGAACGAGTATATATTTTTGATTCGTGCTTTTCCACTGAAGTATTGCCCGAGGGTATGTACCAAATATATCTACATGAAATCATAAACGAATTACATGAAGAATTCCCAGACTCCTCCTTCCTTGCATTTAATTTTCGCGAAGGAGAGAACAGGAGCCAATTTGCAGAAATGTTGCGGGAGTATGATGTCACTGTGATGGATTATCCTCGACAGTATGAAGGTTGCCCTCTTCTTCCATTGTCTTTAATACAGCACTTCCTCCGTGTTTGTGAAAGTTGGCTTCTGCTTGGTAACCAGCAAAATATCATTCTTCTTCACTGTGAGAGGGGAGGTTGGCCACTCTTGGCATTTCTTTTGGCTAGCTTTTTGATATTTAGAAAATTGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAAGGGTTTTTGCAGCTCTTGTCACCATTAAATCCATTGCCATCTCAGCTCCGCTACCTGCAGTATGTTGCAAGGAGAACTATAGTATCTGAGTGGCCCCCGCCTGAGCGAGCGCTCTCTTTAGATTGTGTAATTATTCGTGGCATTCCCGGTTTTGATTCTCAGAATGGTTGCAGACCAGTTATTCGTATTTTTGGGAGAAATCTTTTTAGTAAGGGCGGGCTTTCCACACAGATGATTTTTTCCATGCCCAAGAAGAACAAGGCCCTCCGTCACTACCGTCAGGCAGACTGTGATGTGATTAAAATCGACGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAATGTTCACATTTGGAATCAGAACCAGAAAGGGAAGTTATGATGTTTCGTATCATGTTCAATACAGCATTTATACGATCAAACATATTGATGCTAGCCTCAGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTACCCAAAAGGGTTTCGAGCTGAGGTTTTGTTTGGGGAGATAGAAAGCATCTCCCCTCCAAGGGCTCCAACCACAATTTTGAATGGCGAAGAGAAAGGTGGACTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGCTGAGTGGCTTGATAGCAATGACGATGTTGCCTTGTGGTTACTTAAGAATCTTTCTGCCTTGAGTGATGTGAAAGAACGGTCAAGATTGCAAAATAAAACAAGTTCATATTCCTCGCCAGTGGATTCTGAGGAGGAAAATAATACGTCTAGCACTGCCGATAGTTCAGATGAAGTATTTGATATCATGACAAAAACTTCAATTGATTCAACTTCAACCAATTTTACAATTCCAACTATGGTACATTCTTCTGAATTATTTTCTGACAAGACTGGTGCTAGCGAAGTGAACATTTTATCAAAGTCGCCTCAAACTCGTGATGAATGTGGAGACAACATCTTTTTAAATAATGAATCTCCACCCTCTTCATCACCTCCACTAACTTCTTCTAGCTTCTCACCCCCTTCTATAAGTTCTTCGATGCCATTGCCACCTATGCCTCCATCTAATCTACCATCTACAAATATTAGTGGGGAACTTGTCTCAAATAAAATGACACCTACCGTTAAAGATATCCCTCCGCCACTGCCACCACCACCACCACCACCTTTTTCTCTATCTCATAATGAACGCCATGTAGAAACTTCCATCACTTCAGACTCGAGCTCCACGACAATGCATGGGATTTCACCTCCACCCCCTCCATCTCAACATCCTAGTAGTAACAATCCTGTTACGACCTCTTTGATTGCTTCACATTCGCTCGTTACTAAATCTTTTAGTGCTCCTCCACCTCCACCTCCTCCTCCTCCTCCAATGTTTCCAAAATCTTCTAGTGCTCCTCCACCTCCCCCGCCTCCAGTTCCAAAATCTTCTAGTGTTCCTCCACCTCCACCTCCACCTCCACCTCCTCCCCCACCTCTACATTCAATTCCAAAATCTTCAAGTGTTCCTCCACCACCACCACCTCCTCCTATTTCGAAGTCTTCTAGTGCTCCTCCACCTCCACCCCCACCTCCTATATCAAAGTCTTCTAGTGCTCTTCCGCCTCCGCCTCCGCCTCCGCCTCCTATATCAAAGTCTTCTAGTGCTCCTCCGCCTCCACCTCCCCCTCCTATATCAAAGTCCATTAGTGCTCCTCCACCTCCACCTCCACCTCCTCTTCCACAATCAAACCGTGGTGTGGCACCAGTACCACCTCCTCCACCACCAAAACCTCCTGGTGTTGAGCTGCCAAGTCAAGGTACTAAATCAACCAGGCCTCCTCCACCTCCTCCACCAACAAAGTCCTTCAATGCTGATCCTACAACAAGTCATGGTGCTACACCAATGCCACCACCGCCCCCTGGATCAAGAGGGTTAAATGTTCCACCACCCCCTCCTTCCGTTGGGAGGGGGAAGACTTCTCTAGGATCAACAACTCAAGGAAGAGGCCGAGTTGCTACGGGAGTTGTAAATACTACTCCAAAGAAAACCACTTTAAAACCATTGCACTGGGTGAAAGTTACTCGTGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAACCAATCAAGGGCTCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGCAGTAAGGGTGGAGGACGACGCGGTTCTAACATCAACAAACCTGAAAAAGTGCAACTGATTGACTTGCGGAGAGCGTATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATTAATTCCGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGATCAGGTTGAAAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGAGTTATACAGGTGACAAAGAAATGCTTGGAAAGTGTGAGCAGTTTTTTCTCGAGCTAATGAAGGTCCCACGAACAGAGTCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCAAGTCAGGTGAATGATTTGAGACATAATTTGAGTACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGAAAAATTGCGTCAGATAATGCAAACAATTCTTACACTGGGAAATGCGTTAAACCAGGGCACTGCTCGAGGCTCTGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCAGACACACGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCCTTGCAGAAAAATTGCCCGAGTTACTTGATTTTGACAAGGACCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAAGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAGCTGCTTCTGAAAATGACGGTGCTGTCTCTGTTGGATTCCAGAAGGTTCTGAAGAATTTTCTTGATACTGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCGGAAGTGGGGAGAAATGCAGATTCATTATCCCAGTACTTCGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATTTTGATAGTCTTCGTTAAGATGTTCAGGAAGTCACGAGAAGAAAATGAAAGGCTGGCTGATGCTGAAAAGAAAAAAATAGAGAAGGAAGCCATGAAAGAACGAAGTTCAGTTAAAGCAAAGTGA | 3735 | 43.8 | MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPEGMYQIYLHEIINELHEEFPDSSFLAFNFREGENRSQFAEMLREYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNIILLHCERGGWPLLAFLLASFLIFRKLHSGERKTLEIVHREAPKGFLQLLSPLNPLPSQLRYLQYVARRTIVSEWPPPERALSLDCVIIRGIPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMIFSMPKKNKALRHYRQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLASENLDILWDSKERYPKGFRAEVLFGEIESISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGAEWLDSNDDVALWLLKNLSALSDVKERSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDIMTKTSIDSTSTNFTIPTMVHSSELFSDKTGASEVNILSKSPQTRDECGDNIFLNNESPPSSSPPLTSSSFSPPSISSSMPLPPMPPSNLPSTNISGELVSNKMTPTVKDIPPPLPPPPPPPFSLSHNERHVETSITSDSSSTTMHGISPPPPPSQHPSSNNPVTTSLIASHSLVTKSFSAPPPPPPPPPPMFPKSSSAPPPPPPPVPKSSSVPPPPPPPPPPPPPLHSIPKSSSVPPPPPPPPISKSSSAPPPPPPPPISKSSSALPPPPPPPPPISKSSSAPPPPPPPPISKSISAPPPPPPPPLPQSNRGVAPVPPPPPPKPPGVELPSQGTKSTRPPPPPPPTKSFNADPTTSHGATPMPPPPPGSRGLNVPPPPPSVGRGKTSLGSTTQGRGRVATGVVNTTPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKSYTGDKEMLGKCEQFFLELMKVPRTESKLRVFAFKITFSSQVNDLRHNLSTINDATREVKESEKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKLPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELAASENDGAVSVGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFRKSREENERLADAEKKKIEKEAMKERSSVKAK | 1244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1370090 | 1379039 | - | Sed0017654.1 | Sed05g0223 | 712849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0223 | 1244 | Coils | Coil | 1119 | 1146 | - | - | |
Sed05g0223 | 1244 | FunFam | Formin-like protein | 837 | 1224 | - | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 473 | 843 | - | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 891 | 911 | - | - | |
Sed05g0223 | 1244 | SMART | PTEN_C2_2 | 198 | 338 | IPR014020 | - | |
Sed05g0223 | 1244 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 851 | 1232 | - | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 595 | 613 | - | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 563 | 581 | - | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 794 | 818 | - | - | |
Sed05g0223 | 1244 | SMART | it6_source | 507 | 1244 | IPR015425 | - | |
Sed05g0223 | 1244 | ProSiteProfiles | C2 tensin-type domain profile. | 200 | 339 | IPR014020 | - | |
Sed05g0223 | 1244 | Pfam | Formin Homology 2 Domain | 841 | 1212 | IPR015425 | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 891 | 905 | - | - | |
Sed05g0223 | 1244 | Gene3D | Protein tyrosine phosphatase superfamily | 16 | 192 | IPR029021 | - | |
Sed05g0223 | 1244 | PANTHER | FORMIN-J | 643 | 1236 | IPR051144 | - | |
Sed05g0223 | 1244 | PRINTS | Proline rich extensin signature | 632 | 657 | - | - | |
Sed05g0223 | 1244 | PRINTS | Proline rich extensin signature | 536 | 557 | - | - | |
Sed05g0223 | 1244 | PRINTS | Proline rich extensin signature | 585 | 602 | - | - | |
Sed05g0223 | 1244 | PRINTS | Proline rich extensin signature | 492 | 508 | - | - | |
Sed05g0223 | 1244 | PRINTS | Proline rich extensin signature | 519 | 531 | - | - | |
Sed05g0223 | 1244 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 838 | 1238 | IPR015425 | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 614 | 764 | - | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 473 | 511 | - | - | |
Sed05g0223 | 1244 | Pfam | C2 domain of PTEN tumour-suppressor protein | 198 | 338 | IPR014020 | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 771 | 785 | - | - | |
Sed05g0223 | 1244 | Gene3D | - | 197 | 342 | - | - | |
Sed05g0223 | 1244 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 16 | 187 | IPR029021 | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 405 | 432 | - | - | |
Sed05g0223 | 1244 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 200 | 339 | IPR035892 | - | |
Sed05g0223 | 1244 | Gene3D | Formin, FH2 domain | 838 | 1223 | IPR042201 | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 1217 | 1244 | - | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 820 | 843 | - | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 544 | 560 | - | - | |
Sed05g0223 | 1244 | Coils | Coil | 1215 | 1235 | - | - | |
Sed05g0223 | 1244 | MobiDBLite | consensus disorder prediction | 403 | 432 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g0223 | Sed-Chr5:1370090 | Sed13g1968 | Sed-Chr13:24532389 | 5.60E-254 | dispersed | |
Sed05g0223 | Sed-Chr5:1370090 | Sed01g2329 | Sed-Chr1:17594475 | 1.10E-206 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0223 | K28090 | - | csv:101217517 | 956.436 |