Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0243 ATGGCACCATCTCACTTCATGTTTCCCACATCAAAACAGCATTGGTATTCACCAGATACAGGAATTTACCATAGTCTTCACTCCTCTAGAAGCTTGCCCACTGACCCATTTCTTGATGTAGTCTCTTTCATTTTCTCATTCAAACACAATGGGATTTCAGCTTTCATTGATTCCTCAACTGGGTATTCAATTTCTTACTCAGAATTGCTTCCCATGGTCAAGTCCATGGCTTCTGCCCTCCACAAGATGGGGATTTCACAAGGGGATGTGGTTTTGCTTCTGTTGCCAAATTCAATTTTCTACCCCATTATTCTCTTGGCTGTTCTGTATTTGGGAGCAGTTGTAACCACCATGTTTCCTCAAAGCAGTTCCTTAGAAATCAAGAAACGAATGAGTGATTGTAATGTGCGGTTGGCTTTCTCAATTCCTCAGAAAGTTGAGGATTTTAGAGCTTTGGGGATTCCAGCGATTGGTGTACCAGAAAATGTGAATTTGGGGGTTTCTTCTTTTTGTGAGCTTATTTCAGGTGGTTTTGATTTGGTTAAAAGACCAGTGATTAAGCAGGAAGATACAGCTGCTATATTCTTTTCTTCAGGTTCTACTGGAGTGAGCAAAGGGGCTATGCTGACTCACAGGAATTTGATATCTATGGTTGAGCTTTTTGTTAGGTTTGAAGCTTCACAGTATGAGTATTTGACTTCAGAGAATGTGTATTTAGCTGTTTTACCAATGTTTCATATATACGGCCTCTCCTTTTTCGTTATGGGATTGATGTCATTGGGCTCTAGTGTTGTAGTAATGAACAAATTTGATGTCAAAGAGGTAGTTAAAGCCATTGATAGATTTGAAGTCACACATTTTCCAGTTGTTCCACCAATATTGTCAGTTCTTGCTAAGACTGCACAGAAAGTTGGTAGACATCGATTTCGGAGTTTGAAACAAGTTTCGTGTGGGGCTGCTACTTTGAGCAAGAAAACCATAGAGGAATTTGTGCAGGCTTTCCCTCAAGTTGACTTCATTCAGGGATATGGCATGACCGAGTCCACAGCTATAGGAACACGTGGCTTCAATACGAAAAAGGCGCAAAAATATACGTCAGTGGGACTTTTAGCTCCAAACATAGAAGCTAAAGTAGTTGATTGGGTTAGCGGATCTTCCATGCCTCCTGGTAAAACTGGCGAACTTTGGTTACGCGGACCTGGTTCGATGAAAGGGTACTTGAATAATCCAGAAGCAACAATGTCCATAATAGACCAAGAAAATTGGCTTCACACTGGAGACATCGTCTACTTTGACCAAGAAGGATACTTATATGTTGTTGATCGTTTGAAGGAGGTTATAAAATATAAAGGCTTTCAGATTGCTCCTACTGATTTAGAGGCTGTAGTGATCACACATCCGGAAGTTCTCGAGGTTGCGGTAGCAGCTACTGGGGAGCTACGAGACTATGAGTTTGATCCATGTTGGTCAACACTATCTTGA 1482 41.09 MAPSHFMFPTSKQHWYSPDTGIYHSLHSSRSLPTDPFLDVVSFIFSFKHNGISAFIDSSTGYSISYSELLPMVKSMASALHKMGISQGDVVLLLLPNSIFYPIILLAVLYLGAVVTTMFPQSSSLEIKKRMSDCNVRLAFSIPQKVEDFRALGIPAIGVPENVNLGVSSFCELISGGFDLVKRPVIKQEDTAAIFFSSGSTGVSKGAMLTHRNLISMVELFVRFEASQYEYLTSENVYLAVLPMFHIYGLSFFVMGLMSLGSSVVVMNKFDVKEVVKAIDRFEVTHFPVVPPILSVLAKTAQKVGRHRFRSLKQVSCGAATLSKKTIEEFVQAFPQVDFIQGYGMTESTAIGTRGFNTKKAQKYTSVGLLAPNIEAKVVDWVSGSSMPPGKTGELWLRGPGSMKGYLNNPEATMSIIDQENWLHTGDIVYFDQEGYLYVVDRLKEVIKYKGFQIAPTDLEAVVITHPEVLEVAVAATGELRDYEFDPCWSTLS 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1441098 1444449 + Sed0002429.2 Sed05g0243 712869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0243 493 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 475 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
Sed05g0243 493 FunFam Long-chain-fatty-acid--CoA ligase FadD 30 444 - -
Sed05g0243 493 Gene3D - 31 444 IPR042099 -
Sed05g0243 493 CDD 4CL 32 474 - -
Sed05g0243 493 Gene3D - 445 484 IPR045851 -
Sed05g0243 493 Pfam AMP-binding enzyme 52 407 IPR000873 -
Sed05g0243 493 SUPERFAMILY Acetyl-CoA synthetase-like 54 476 - -
Sed05g0243 493 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4153 Sed-Chr1:70288804 Sed05g0243 Sed-Chr5:1441098 1.00E-208 dispersed
Sed05g0243 Sed-Chr5:1441098 Sed13g2178 Sed-Chr13:26382796 1.70E-105 dispersed
Sed05g0243 Sed-Chr5:1441098 Sed05g0244 Sed-Chr5:1441100 7.60E-271 tandem
Sed01g4152 Sed-Chr1:70288804 Sed05g0243 Sed-Chr5:1441098 5.30E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0243 K01904 - csv:101219578 749.969