Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0244 ATGGCACCATCTCACTTCATGTTTCCCACATCAAAACAGCATTGGTATTCACCAGATACAGGAATTTACCATAGTCTTCACTCCTCTAGAAGCTTGCCCACTGACCCATTTCTTGATGTAGTCTCTTTCATTTTCTCATTCAAACACAATGGGATTTCAGCTTTCATTGATTCCTCAACTGGGTATTCAATTTCTTACTCAGAATTGCTTCCCATGGTCAAGTCCATGGCTTCTGCCCTCCACAAGATGGGGATTTCACAAGGGGATGTGGTTTTGCTTCTGTTGCCAAATTCAATTTTCTACCCCATTATTCTCTTGGCTGTTCTGTATTTGGGAGCAGTTGTAACCACCATGTTTCCTCAAAGCAGTTCCTTAGAAATCAAGAAACGAATGAGTGATTGTAATGTGCGGTTGGCTTTCTCAATTCCTCAGAAAGTTGAGGATTTTAGAGCTTTGGGGATTCCAGCGATTGGTGTACCAGAAAATGTGAATTTGGGGGTTTCTTCTTTTTGTGAGCTTATTTCAGGTGGTTTTGATTTGGTTAAAAGACCAGTGATTAAGCAGGAAGATACAGCTGCTATATTCTTTTCTTCAGGTTCTACTGGAGTGAGCAAAGGGGCTATGCTGACTCACAGGAATTTGATATCTATGGTTGAGCTTTTTGTTAGGTTTGAAGCTTCACAGTATGAGTATTTGACTTCAGAGAATGTGTATTTAGCTGTTTTACCAATGTTTCATATATACGGCCTCTCCTTTTTCGTTATGGGATTGATGTCATTGGGCTCTAGTGTTGTAGTAATGAACAAATTTGATGTCAAAGAGGTAGTTAAAGCCATTGATAGATTTGAAGTCACACATTTTCCAGTTGTTCCACCAATATTGTCAGTTCTTGCTAAGACTGCACAGAAAGTTGGTAGACATCGATTTCGGAGTTTGAAACAAGTTTCGTGTGGGGCTGCTACTTTGAGCAAGAAAACCATAGAGGAATTTGTGCAGGCTTTCCCTCAAGTTGACTTCATTCAGGGATATGGCATGACCGAGTCCACAGCTATAGGAACACGTGGCTTCAATACGAAAAAGGCGCAAAAATATACGTCAGTGGGACTTTTAGCTCCAAACATAGAAGCTAAAGTAGTTGATTGGGTTAGCGGATCTTCCATGCCTCCTGGTAAAACTGGCGAACTTTGGTTACGCGGACCTGGTTCGATGAAAGGGTACTTGAATAATCCAGAAGCAACAATGTCCATAATAGACCAAGAAAATTGGCTTCACACTGGAGACATCGTCTACTTTGACCAAGAAGGATACTTATATGTTGTTGATCGTTTGAAGGAGGTTATAAAATATAAAGGCTTTCAGATTGCTCCTACTGATTTAGAGGCTGTAGTGATCACACATCCGGAAGTTCTCGAGGTTGCGGTAGCAGCGGCTGCTGATGAAGACTGTGGGGAAATTCCAGTGGCATTTGTCATTAAGAAGTCAGGAAGCACACTCTCACAAAAAGATGTTATAGAGTTTGTTGCTCAACAGGTTGCGCCATATAAAAAAGTCAGAAAAGTGGTATTTACAGAAGCGATACCGAAGTCTGCGGCTGGCAAAGTACTGCGCAGGGAATTGGTGAAGCATTTGGCTTGTAGACTCTAA 1644 41.36 MAPSHFMFPTSKQHWYSPDTGIYHSLHSSRSLPTDPFLDVVSFIFSFKHNGISAFIDSSTGYSISYSELLPMVKSMASALHKMGISQGDVVLLLLPNSIFYPIILLAVLYLGAVVTTMFPQSSSLEIKKRMSDCNVRLAFSIPQKVEDFRALGIPAIGVPENVNLGVSSFCELISGGFDLVKRPVIKQEDTAAIFFSSGSTGVSKGAMLTHRNLISMVELFVRFEASQYEYLTSENVYLAVLPMFHIYGLSFFVMGLMSLGSSVVVMNKFDVKEVVKAIDRFEVTHFPVVPPILSVLAKTAQKVGRHRFRSLKQVSCGAATLSKKTIEEFVQAFPQVDFIQGYGMTESTAIGTRGFNTKKAQKYTSVGLLAPNIEAKVVDWVSGSSMPPGKTGELWLRGPGSMKGYLNNPEATMSIIDQENWLHTGDIVYFDQEGYLYVVDRLKEVIKYKGFQIAPTDLEAVVITHPEVLEVAVAAAADEDCGEIPVAFVIKKSGSTLSQKDVIEFVAQQVAPYKKVRKVVFTEAIPKSAAGKVLRRELVKHLACRL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1441100 1446491 + Sed0002429.1 Sed05g0244 712870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0244 547 FunFam 4-coumarate--CoA ligase 2 445 545 - -
Sed05g0244 547 Gene3D - 31 444 IPR042099 -
Sed05g0244 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 30 444 - -
Sed05g0244 547 SUPERFAMILY Acetyl-CoA synthetase-like 54 543 - -
Sed05g0244 547 Gene3D - 445 545 IPR045851 -
Sed05g0244 547 Pfam AMP-binding enzyme 52 407 IPR000873 -
Sed05g0244 547 CDD 4CL 32 539 - -
Sed05g0244 547 Pfam AMP-binding enzyme C-terminal domain 459 533 IPR025110 -
Sed05g0244 547 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Sed05g0244 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 539 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4152 Sed-Chr1:70288804 Sed05g0244 Sed-Chr5:1441100 2.50E-254 dispersed
Sed05g0244 Sed-Chr5:1441100 Sed13g2178 Sed-Chr13:26382796 2.70E-128 dispersed
Sed05g0243 Sed-Chr5:1441098 Sed05g0244 Sed-Chr5:1441100 7.60E-271 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0244 K01904 - csv:101219578 852.432