Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0253 | ATGGGTGCTAGCGAGATGAATAAATCGTCAAAGGAGGACTCTGAATCAACGCCTGCCACTACGCAGGAAGAGACTCCAAACACAAGCACTGGCATTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATATGGCAACAAGTCCCCAGGCACATCCATATATGTGGGGGGTACAGCCCATGATGCCCCCTTATGGAGCTCCACATCCCTATGTTGCAATGTATCCCCATGGCGGCATATATGCTCATCCGCCTATTCCTCCGGGATCATATCCTTACAGCCCTTTTGCTATGGCTTCTCCAAATGGCATAGCTGAGGCTTCTGGGAATACACCAGGCAACATCGAAGGGGATGGTAAGCCATCAGAGCTGAAAGAAAAGCTGCCAATTAAGAGATCGAAAGGAAGTCTGGGAAGTTTGAACATGATAACTGGGAAGAACAATGAGCTTAGTAAACCGTCAGGAACACTTGTTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGTTCAAGTGAAAGAAGTGATGCTGATTCTCAAAATGATTCACAACTAAAATCTGGTTCTGGAAAAGATTCTTTGGAAGGAGGGACTCCTAATGGTTTGATGCATGGTTCTCAGAATGAAGGACACAGTCTCGCTCATCCGTTGGCGAACCAAACTATGGCCATGATACCAATTCAAGCTTCTGGAGCTACAGGTCCTGCTACAAATTTAAACATAGGAATGGATTATTGGGGTACTCCAACTTCTGCCGTCCCTTCATTGTGTGGGAAGGTCCCTTCGGCTCCGGTTGTGGGAGCTGCGGCTTCTGGGTCACGGGACAGCATTCAGTCACAGATTTGGTTACAGGATGAAAGAGAGCTGAAAAGGCAAAGAAGGAAGCAGTCAAACAGAGAATCCGCCCGTAGATCTCGGCTGCGTAAACAGGCTGAATGCGATGAGCTTTCTCAGCGGGCCGATGCTTTAAAGGAGGAAAATTCGAGTCTTAGATCTGAAGTGGAGAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAGAATGCCTCTCTCAAGAGGAGGCTCGGGGAAAGTGATGGAAATGAAGATCCAAGATCCGCCAAAGACGGCCAAAATTTGAACAAAGAACCTCAGCATACATCGGACCGAACACGCTAA | 1185 | 46.92 | MGASEMNKSSKEDSESTPATTQEETPNTSTGIVNPEWSGFQAYSPIPPPGYMATSPQAHPYMWGVQPMMPPYGAPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAMASPNGIAEASGNTPGNIEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELSKPSGTLVNGVYSKSAESESEGSSERSDADSQNDSQLKSGSGKDSLEGGTPNGLMHGSQNEGHSLAHPLANQTMAMIPIQASGATGPATNLNIGMDYWGTPTSAVPSLCGKVPSAPVVGAAASGSRDSIQSQIWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRADALKEENSSLRSEVERIRSEYEQLLSENASLKRRLGESDGNEDPRSAKDGQNLNKEPQHTSDRTR | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1493170 | 1500484 | + | Sed0016022.1 | Sed05g0253 | 712879 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0253 | 394 | MobiDBLite | consensus disorder prediction | 116 | 221 | - | - | |
Sed05g0253 | 394 | CDD | bZIP_plant_GBF1 | 300 | 350 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0253 | 394 | MobiDBLite | consensus disorder prediction | 144 | 175 | - | - | |
Sed05g0253 | 394 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 302 | 317 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0253 | 394 | Pfam | G-box binding protein MFMR | 1 | 94 | IPR012900 | - | |
Sed05g0253 | 394 | SUPERFAMILY | Leucine zipper domain | 298 | 354 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0253 | 394 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Sed05g0253 | 394 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 297 | 360 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0253 | 394 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Sed05g0253 | 394 | MobiDBLite | consensus disorder prediction | 296 | 394 | - | - | |
Sed05g0253 | 394 | MobiDBLite | consensus disorder prediction | 312 | 351 | - | - | |
Sed05g0253 | 394 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 21 | 387 | IPR044827 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER) | |
Sed05g0253 | 394 | MobiDBLite | consensus disorder prediction | 190 | 221 | - | - | |
Sed05g0253 | 394 | MobiDBLite | consensus disorder prediction | 361 | 394 | - | - | |
Sed05g0253 | 394 | Gene3D | - | 298 | 353 | - | - | |
Sed05g0253 | 394 | SMART | brlzneu | 295 | 359 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0253 | 394 | Pfam | Disordered region downstream of MFMR | 133 | 261 | - | - | |
Sed05g0253 | 394 | Coils | Coil | 308 | 363 | - | - | |
Sed05g0253 | 394 | Pfam | bZIP transcription factor | 295 | 357 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0056 | Sed-Chr2:5490427 | Sed05g0253 | Sed-Chr5:1493170 | 4.70E-91 | dispersed | |
Sed05g0253 | Sed-Chr5:1493170 | Sed10g0905 | Sed-Chr10:7011165 | 5.30E-25 | dispersed | |
Sed05g0253 | Sed-Chr5:1493170 | Sed05g0254 | Sed-Chr5:1493170 | 2.10E-162 | tandem | |
Sed04g0881 | Sed-Chr4:7920364 | Sed05g0253 | Sed-Chr5:1493170 | 4.80E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38430 | PF16596 | MFMR_assoc | 4.90E-43 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0253 | K09060 | - | csv:101214217 | 662.144 |