Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0253 ATGGGTGCTAGCGAGATGAATAAATCGTCAAAGGAGGACTCTGAATCAACGCCTGCCACTACGCAGGAAGAGACTCCAAACACAAGCACTGGCATTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATATGGCAACAAGTCCCCAGGCACATCCATATATGTGGGGGGTACAGCCCATGATGCCCCCTTATGGAGCTCCACATCCCTATGTTGCAATGTATCCCCATGGCGGCATATATGCTCATCCGCCTATTCCTCCGGGATCATATCCTTACAGCCCTTTTGCTATGGCTTCTCCAAATGGCATAGCTGAGGCTTCTGGGAATACACCAGGCAACATCGAAGGGGATGGTAAGCCATCAGAGCTGAAAGAAAAGCTGCCAATTAAGAGATCGAAAGGAAGTCTGGGAAGTTTGAACATGATAACTGGGAAGAACAATGAGCTTAGTAAACCGTCAGGAACACTTGTTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGTTCAAGTGAAAGAAGTGATGCTGATTCTCAAAATGATTCACAACTAAAATCTGGTTCTGGAAAAGATTCTTTGGAAGGAGGGACTCCTAATGGTTTGATGCATGGTTCTCAGAATGAAGGACACAGTCTCGCTCATCCGTTGGCGAACCAAACTATGGCCATGATACCAATTCAAGCTTCTGGAGCTACAGGTCCTGCTACAAATTTAAACATAGGAATGGATTATTGGGGTACTCCAACTTCTGCCGTCCCTTCATTGTGTGGGAAGGTCCCTTCGGCTCCGGTTGTGGGAGCTGCGGCTTCTGGGTCACGGGACAGCATTCAGTCACAGATTTGGTTACAGGATGAAAGAGAGCTGAAAAGGCAAAGAAGGAAGCAGTCAAACAGAGAATCCGCCCGTAGATCTCGGCTGCGTAAACAGGCTGAATGCGATGAGCTTTCTCAGCGGGCCGATGCTTTAAAGGAGGAAAATTCGAGTCTTAGATCTGAAGTGGAGAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAGAATGCCTCTCTCAAGAGGAGGCTCGGGGAAAGTGATGGAAATGAAGATCCAAGATCCGCCAAAGACGGCCAAAATTTGAACAAAGAACCTCAGCATACATCGGACCGAACACGCTAA 1185 46.92 MGASEMNKSSKEDSESTPATTQEETPNTSTGIVNPEWSGFQAYSPIPPPGYMATSPQAHPYMWGVQPMMPPYGAPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAMASPNGIAEASGNTPGNIEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELSKPSGTLVNGVYSKSAESESEGSSERSDADSQNDSQLKSGSGKDSLEGGTPNGLMHGSQNEGHSLAHPLANQTMAMIPIQASGATGPATNLNIGMDYWGTPTSAVPSLCGKVPSAPVVGAAASGSRDSIQSQIWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRADALKEENSSLRSEVERIRSEYEQLLSENASLKRRLGESDGNEDPRSAKDGQNLNKEPQHTSDRTR 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1493170 1500484 + Sed0016022.1 Sed05g0253 712879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0253 394 MobiDBLite consensus disorder prediction 116 221 - -
Sed05g0253 394 CDD bZIP_plant_GBF1 300 350 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0253 394 MobiDBLite consensus disorder prediction 144 175 - -
Sed05g0253 394 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 302 317 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0253 394 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Sed05g0253 394 SUPERFAMILY Leucine zipper domain 298 354 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0253 394 MobiDBLite consensus disorder prediction 1 41 - -
Sed05g0253 394 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 297 360 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0253 394 MobiDBLite consensus disorder prediction 1 37 - -
Sed05g0253 394 MobiDBLite consensus disorder prediction 296 394 - -
Sed05g0253 394 MobiDBLite consensus disorder prediction 312 351 - -
Sed05g0253 394 PANTHER G-BOX-BINDING FACTOR 3-RELATED 21 387 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Sed05g0253 394 MobiDBLite consensus disorder prediction 190 221 - -
Sed05g0253 394 MobiDBLite consensus disorder prediction 361 394 - -
Sed05g0253 394 Gene3D - 298 353 - -
Sed05g0253 394 SMART brlzneu 295 359 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0253 394 Pfam Disordered region downstream of MFMR 133 261 - -
Sed05g0253 394 Coils Coil 308 363 - -
Sed05g0253 394 Pfam bZIP transcription factor 295 357 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0056 Sed-Chr2:5490427 Sed05g0253 Sed-Chr5:1493170 4.70E-91 dispersed
Sed05g0253 Sed-Chr5:1493170 Sed10g0905 Sed-Chr10:7011165 5.30E-25 dispersed
Sed05g0253 Sed-Chr5:1493170 Sed05g0254 Sed-Chr5:1493170 2.10E-162 tandem
Sed04g0881 Sed-Chr4:7920364 Sed05g0253 Sed-Chr5:1493170 4.80E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38430 PF16596 MFMR_assoc 4.90E-43 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0253 K09060 - csv:101214217 662.144