Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0254 ATGGCAACAAGTCCCCAGGCACATCCATATATGTGGGGGGTACAGCCCATGATGCCCCCTTATGGAGCTCCACATCCCTATGTTGCAATGTATCCCCATGGCGGCATATATGCTCATCCGCCTATTCCTCCGGGATCATATCCTTACAGCCCTTTTGCTATGGCTTCTCCAAATGGCATAGCTGAGGCTTCTGGGAATACACCAGGCAACATCGAAGGGGATGGTAAGCCATCAGAGCTGAAAGAAAAGCTGCCAATTAAGAGATCGAAAGGAAGTCTGGGAAGTTTGAACATGATAACTGGGAAGAACAATGAGCTTAGTAAACCGTCAGGAACACTTGTTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGTTCAAGTGAAAGAAGTGATGCTGATTCTCAAAATGATTCACAACTAAAATCTGGTTCTGGAAAAGATTCTTTGGAAGGAGGGACTCCTAATGGTTTGATGCATGGTTCTCAGAATGAAGGACACAGTCTCGCTCATCCGTTGGCGAACCAAACTATGGCCATGATACCAATTCAAGCTTCTGGAGCTACAGGTCCTGCTACAAATTTAAACATAGGAATGGATTATTGGGGTACTCCAACTTCTGCCGTCCCTTCATTGTGTGGGAAGGTCCCTTCGGCTCCGGTTGTGGGAGCTGCGGCTTCTGGGTCACGGGACAGCATTCAGTCACAGATTTGGTTACAGGATGAAAGAGAGCTGAAAAGGCAAAGAAGGAAGCAGTCAAACAGAGAATCCGCCCGTAGATCTCGGCTGCGTAAACAGGCTGAATGCGATGAGCTTTCTCAGCGGGCCGATGCTTTAAAGGAGGAAAATTCGAGTCTTAGATCTGAAGTGGAGAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAGAATGCCTCTCTCAAGAGGAGGCTCGGGGAAAGTGATGGAAATGAAGATCCAAGATCCGCCAAAGACGGCCAAAATTTGAACAAAGAACCTCAGCATACATCGGACCGAACACGCTAA 1032 47.0 MATSPQAHPYMWGVQPMMPPYGAPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAMASPNGIAEASGNTPGNIEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELSKPSGTLVNGVYSKSAESESEGSSERSDADSQNDSQLKSGSGKDSLEGGTPNGLMHGSQNEGHSLAHPLANQTMAMIPIQASGATGPATNLNIGMDYWGTPTSAVPSLCGKVPSAPVVGAAASGSRDSIQSQIWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRADALKEENSSLRSEVERIRSEYEQLLSENASLKRRLGESDGNEDPRSAKDGQNLNKEPQHTSDRTR 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1493170 1500484 + Sed0016022.2 Sed05g0254 712880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0254 343 MobiDBLite consensus disorder prediction 261 300 - -
Sed05g0254 343 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 246 309 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0254 343 MobiDBLite consensus disorder prediction 245 343 - -
Sed05g0254 343 SUPERFAMILY Leucine zipper domain 247 303 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0254 343 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 251 266 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0254 343 PANTHER G-BOX-BINDING FACTOR 3-RELATED 2 336 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Sed05g0254 343 Pfam G-box binding protein MFMR 1 43 IPR012900 -
Sed05g0254 343 CDD bZIP_plant_GBF1 249 299 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0254 343 SMART brlzneu 244 308 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0254 343 MobiDBLite consensus disorder prediction 93 124 - -
Sed05g0254 343 MobiDBLite consensus disorder prediction 310 343 - -
Sed05g0254 343 Pfam bZIP transcription factor 244 306 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g0254 343 Coils Coil 257 312 - -
Sed05g0254 343 Gene3D - 247 301 - -
Sed05g0254 343 MobiDBLite consensus disorder prediction 139 170 - -
Sed05g0254 343 Pfam Disordered region downstream of MFMR 82 210 - -
Sed05g0254 343 MobiDBLite consensus disorder prediction 60 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0881 Sed-Chr4:7920364 Sed05g0254 Sed-Chr5:1493170 1.80E-78 dispersed
Sed05g0254 Sed-Chr5:1493170 Sed10g0905 Sed-Chr10:7011165 9.70E-23 dispersed
Sed05g0253 Sed-Chr5:1493170 Sed05g0254 Sed-Chr5:1493170 2.10E-162 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38431 PF16596 MFMR_assoc 3.70E-43 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0254 K09060 - csv:101214217 570.081