Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0254 | ATGGCAACAAGTCCCCAGGCACATCCATATATGTGGGGGGTACAGCCCATGATGCCCCCTTATGGAGCTCCACATCCCTATGTTGCAATGTATCCCCATGGCGGCATATATGCTCATCCGCCTATTCCTCCGGGATCATATCCTTACAGCCCTTTTGCTATGGCTTCTCCAAATGGCATAGCTGAGGCTTCTGGGAATACACCAGGCAACATCGAAGGGGATGGTAAGCCATCAGAGCTGAAAGAAAAGCTGCCAATTAAGAGATCGAAAGGAAGTCTGGGAAGTTTGAACATGATAACTGGGAAGAACAATGAGCTTAGTAAACCGTCAGGAACACTTGTTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGTTCAAGTGAAAGAAGTGATGCTGATTCTCAAAATGATTCACAACTAAAATCTGGTTCTGGAAAAGATTCTTTGGAAGGAGGGACTCCTAATGGTTTGATGCATGGTTCTCAGAATGAAGGACACAGTCTCGCTCATCCGTTGGCGAACCAAACTATGGCCATGATACCAATTCAAGCTTCTGGAGCTACAGGTCCTGCTACAAATTTAAACATAGGAATGGATTATTGGGGTACTCCAACTTCTGCCGTCCCTTCATTGTGTGGGAAGGTCCCTTCGGCTCCGGTTGTGGGAGCTGCGGCTTCTGGGTCACGGGACAGCATTCAGTCACAGATTTGGTTACAGGATGAAAGAGAGCTGAAAAGGCAAAGAAGGAAGCAGTCAAACAGAGAATCCGCCCGTAGATCTCGGCTGCGTAAACAGGCTGAATGCGATGAGCTTTCTCAGCGGGCCGATGCTTTAAAGGAGGAAAATTCGAGTCTTAGATCTGAAGTGGAGAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAGAATGCCTCTCTCAAGAGGAGGCTCGGGGAAAGTGATGGAAATGAAGATCCAAGATCCGCCAAAGACGGCCAAAATTTGAACAAAGAACCTCAGCATACATCGGACCGAACACGCTAA | 1032 | 47.0 | MATSPQAHPYMWGVQPMMPPYGAPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAMASPNGIAEASGNTPGNIEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELSKPSGTLVNGVYSKSAESESEGSSERSDADSQNDSQLKSGSGKDSLEGGTPNGLMHGSQNEGHSLAHPLANQTMAMIPIQASGATGPATNLNIGMDYWGTPTSAVPSLCGKVPSAPVVGAAASGSRDSIQSQIWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRADALKEENSSLRSEVERIRSEYEQLLSENASLKRRLGESDGNEDPRSAKDGQNLNKEPQHTSDRTR | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1493170 | 1500484 | + | Sed0016022.2 | Sed05g0254 | 712880 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0254 | 343 | MobiDBLite | consensus disorder prediction | 261 | 300 | - | - | |
Sed05g0254 | 343 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 246 | 309 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0254 | 343 | MobiDBLite | consensus disorder prediction | 245 | 343 | - | - | |
Sed05g0254 | 343 | SUPERFAMILY | Leucine zipper domain | 247 | 303 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0254 | 343 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 251 | 266 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0254 | 343 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 2 | 336 | IPR044827 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER) | |
Sed05g0254 | 343 | Pfam | G-box binding protein MFMR | 1 | 43 | IPR012900 | - | |
Sed05g0254 | 343 | CDD | bZIP_plant_GBF1 | 249 | 299 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0254 | 343 | SMART | brlzneu | 244 | 308 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0254 | 343 | MobiDBLite | consensus disorder prediction | 93 | 124 | - | - | |
Sed05g0254 | 343 | MobiDBLite | consensus disorder prediction | 310 | 343 | - | - | |
Sed05g0254 | 343 | Pfam | bZIP transcription factor | 244 | 306 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g0254 | 343 | Coils | Coil | 257 | 312 | - | - | |
Sed05g0254 | 343 | Gene3D | - | 247 | 301 | - | - | |
Sed05g0254 | 343 | MobiDBLite | consensus disorder prediction | 139 | 170 | - | - | |
Sed05g0254 | 343 | Pfam | Disordered region downstream of MFMR | 82 | 210 | - | - | |
Sed05g0254 | 343 | MobiDBLite | consensus disorder prediction | 60 | 170 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0881 | Sed-Chr4:7920364 | Sed05g0254 | Sed-Chr5:1493170 | 1.80E-78 | dispersed | |
Sed05g0254 | Sed-Chr5:1493170 | Sed10g0905 | Sed-Chr10:7011165 | 9.70E-23 | dispersed | |
Sed05g0253 | Sed-Chr5:1493170 | Sed05g0254 | Sed-Chr5:1493170 | 2.10E-162 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38431 | PF16596 | MFMR_assoc | 3.70E-43 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0254 | K09060 | - | csv:101214217 | 570.081 |