Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g0268 | ATGAGAAACCATGGTTCTGTTTCATATGCAGAAGATGAAGATGTTCAAAGCATGAAGAAAAGGAAAAATGAAGAAGAAGATGAAGATCAAGAAGAGGAGGATAATAAAAATGTGAAGAAAAAGAAGCAACAACCACAAAATAAAGTTGCTTTCTATAAATTGTTTGCTTTTGCTGATTGCTATGACTATTTTCTCATGAGTATTGGGTCTATTGGAGCTTGCATCCATGGTGCTTCAGTCCCTATCTTCTTCATCTTCTTTGGGAAACTCATTAATATCATTGGCATGGCTTATCTTTTCCCTCAAGATGCTGCTCCCAAAGTTGCCAAGTACTCTTTGGATTTTTTATATCTCAGTGTAGCAATCCTATTTTCATCATGGGCAGAGGTGGCATGTTGGATGCACAGTGGGGAAAGGCAAGCAGCAAAAATGAGAATGGCATATTTAAGGTCAATGTTGAGTCAAGACATTAGCCTTTTTGACACTGAAGCTTCAACTGGTGAAGTTATTGCTGCTATTACAAGTGACATTGTTATTGTTCAAGATGCCATTTCTGAAAAAGTAGGGAACTTTTTGCACTATATAAGCCGTTTCATTTCAGGGTTTATCATTGGATTTGTGAGGGTATGGCAAATTAGTCTTGTCACATTGTCTATTGTGCCCTTAATTGCACTTGCTGGTGGTCTTTATGCTTTTGTGACCATTGGTCTTATTGCCAAAGTTAGAAAATCCTATGTCAAGGCTGGGGAGATTGCTGAAGAGATTCTAGGAAATGTGAGAACAGTTCAAGCATTTGCTGGGGAAGAAAAAGCAGTGAATTTATACAAAGGAGCTCTCAAGAATACTTACAAGTATGGGAGAAAAGCAGGGCTGGCTAAGGGACTGGGTCTGGGATCCATGCATTGTGTCCTTTTCTTATCATGGGCTCTGCTTGTTTGGTTCACCAGCATTGTTGTTCACAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCCTGTCACTCGGGCAGGCCGCACCAGACATTTCCGCCTTTATTCGAGCAAAGGCTGCAGCCTATCCAATTTTTCAGATGATAGAGAGAAACACAGTTAGTAAAAGCAGTTCCCAAACTGGCATGAAACTAGTTAAACTTGATGGTCATATTCAATTCAAGGATGTTACTTTCAGCTACCCATCTCGTCCGGATGTAGTTATATTTAATAAGTTGTCTCTTGATATTCCTGCTGGCAAGATTGTAGCTCTCGTGGGAGGAAGTGGTTCGGGAAAGAGCACGGTCATATCTTTGATCGAACGATTCTACGAACCCCTTTCTGGAGAGATTCTGTTAGATGGTAGTAACATCAAAGATATAGAACTCAAGTGGCTTAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTTTTTGCTACAAGCATTAGGGAAAACATTCTATATGGAAAAGATAATGCTACCCTTGAGGACATCACACGTGCGGCAAAACTTTCGGAGGCTTTATCGTTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGGCAAAAACAAAGGATTGCAATTTCTCGTGCAATTGTTAAAAATCCATCAATCCTATTGTTGGATGAAGCAACAAGTGCACTAGATGCAGAATCTGAGAAGAGTGTTCAAGAGGCACTCGATCGTGTCATGGTTGGTCGAACAACTGTAGTAGTGGCTCATCGCCTATCAACCGTAAGGAATGCTGATGTTATTGCTGTTGTTCAAGAGGGTAAGATAGTCGAAACTGGAAACCATGATGAGCTAATTGCAAAGCCAGACAGTGTCTATGCATCTCTTGTCCAGTTCCAAGAAACGGCATCTCTGCAACGACATCCCTCGATTGGACAGCTGGGTCGACCGCCGAGCATTAAGTACTCAAGAGAATTATCTCGCACTACAACGAGCTTTGGTGCAAGTTTTCGCTCTGAGAAAGAATCTCTTGGACGGATTGGAATTGATGGGATGGAAATGGAGAAACCAAGACATGTTTCAGCAAGAAGACTTTACGCCATGGTCGGACCGGATTGGATGTATGGAGTTGTCGGTGTCATCGGAGCGTTCGTTACTGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAAGCTCTTGTTGCTTTTTATATGGACTGGAATACAACTCAACATGAGGTCAAAAAAATTTCTTTGCTTTTCTGTGGCGGTGCAGTTTTAACTCTCATTTTTCATGCAATTGAGCATCTCTGTTTTGGAATTATGGGAGAGCGGCTCACTCTTCGAGCTCGAGAAATGATGTTCCATGCTATTTTGAGGAACGAGATCGGATGGTTCGATGATATAAACAACACAAGTGCTATGCTTTCGTCACGTCTAGAGACTGATGCATCTTTGTTACGAACTATAGTTGTCGACCGCTCTACAATTCTTCTGCAGAATTTAGCTTTGGTTGTTGCATCCTTCATCATTGCTTTCATATTGAATTGGAGAATCACTTTGGTCGTCTTGGCCACCTATCCATTGATCATCAGCGGTCACATTAGCGAGAAACTCTTTTTTCAAGGCTACGGTGGTAACTTGAGCAAAGCATACCTGAAAGCCAATACATTGGCGGGTGAGGCAGTTGGCAACATTAGAACTGTTGCTGCATTTTGTTCCGAGCAAAAGGTCCTTGATCTATACGCCAAGGAGCTCGTTGAGCCCTCGAGACGTTCGCTTAAACGAGGACAGATTGCTGGGATATTCTATGGAGTCTCTCAGTTCTTCATCTTTTCATCTTATGGCCTGGCATTGTGGTATGGTTCGGTTTTGATGGGACAGGGGCTTTCGAGCTTCAAATCTGTAATGAAATCATTCATGGTTTTGATTGTAACTGCATTGGCAATGGGTGAGACTTTGGCTTTGGCCCCTGATCTTTTGAAAGGAAACCAGATGGTGGCATCGGTATTCGAGGTGCTGGATCGACAGACAGAGGTGTCGGGCGATGTCGGTGAAGAGCTACATGTGGTGGAGGGTACCATTGAGCTGAGGAGCGTTGAGTTCAGCTATCCATCAAGGCCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGGGCAGGCAAGAGTATAGCCTTGGTTGGACAAAGTGGTTCGGGTAAAAGTTCGGTTCTAGCTCTTATACTGCGATTTTACGATCCAGTTGCTGGGAAGGTGATGATTGATGGAAAAGATATTAAAAGACTGAAGCTCAAATCTCTCAGAAAGCACATTGGTCTCGTCCAGCAGGAACCGGCTCTTTTCGCAACATCGATCTACGAGAACATCCTTTACGGGAAAGAGGGAGCATCAGAAGCTGAAGTATTCGACGCAGCGAAGCTCTCCAATGCACATAACTTCATAAGTGCACTTCCAGAAGGCTACTCAACCAAAGTAGGCGAAAGAGGGATCCAACTCTCGGGTGGCCAACGACAGAGAATAGCAATAGCCAGAGCAGTTCTGAAGAACCCAGAAATACTGCTGCTGGACGAAGCCACGAGCGCGCTCGATGTCGAATCGGAACGCGTGGTTCAGCAAGCGTTGGACAGGCTGATGAAGAACAGAACAACAGTGGTGGTTGCACATAGGCTTTCCACCATTAAAAACTGTGACCAAATCTCAGTGATCCAAGATGGGAAGATGGTTGAACAAGGGACTCATACAAGCCTTATTGAGAACAAGAATGGAGCTTATTATAAGTTGATTAACATCCAACAACAACAACAACAAACACAGTGA | 3810 | 43.28 | MRNHGSVSYAEDEDVQSMKKRKNEEEDEDQEEEDNKNVKKKKQQPQNKVAFYKLFAFADCYDYFLMSIGSIGACIHGASVPIFFIFFGKLINIIGMAYLFPQDAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLSQDISLFDTEASTGEVIAAITSDIVIVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEEKAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFQMIERNTVSKSSSQTGMKLVKLDGHIQFKDVTFSYPSRPDVVIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGSNIKDIELKWLRQQIGLVNQEPALFATSIRENILYGKDNATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADVIAVVQEGKIVETGNHDELIAKPDSVYASLVQFQETASLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGIDGMEMEKPRHVSARRLYAMVGPDWMYGVVGVIGAFVTGSQMPLFALGVSQALVAFYMDWNTTQHEVKKISLLFCGGAVLTLIFHAIEHLCFGIMGERLTLRAREMMFHAILRNEIGWFDDINNTSAMLSSRLETDASLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFFQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEQKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLSSFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVLDRQTEVSGDVGEELHVVEGTIELRSVEFSYPSRPDVLIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPVAGKVMIDGKDIKRLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFDAAKLSNAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKNRTTVVVAHRLSTIKNCDQISVIQDGKMVEQGTHTSLIENKNGAYYKLINIQQQQQQTQ | 1269 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1618835 | 1628288 | + | Sed0001578.1 | Sed05g0268 | 712894 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g0268 | 1269 | Gene3D | - | 1015 | 1269 | IPR027417 | - | |
| Sed05g0268 | 1269 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 66 | 363 | - | - | |
| Sed05g0268 | 1269 | Coils | Coil | 15 | 41 | - | - | |
| Sed05g0268 | 1269 | Gene3D | ABC transporter type 1, transmembrane domain | 9 | 103 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed05g0268 | 1269 | PANTHER | ABC TRANSPORTER B FAMILY | 11 | 651 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Sed05g0268 | 1269 | CDD | ABC_MTABC3_MDL1_MDL2 | 1024 | 1259 | - | - | |
| Sed05g0268 | 1269 | Pfam | ABC transporter transmembrane region | 69 | 338 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed05g0268 | 1269 | Pfam | ABC transporter transmembrane region | 706 | 976 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed05g0268 | 1269 | SUPERFAMILY | ABC transporter transmembrane region | 54 | 360 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed05g0268 | 1269 | Pfam | ABC transporter | 1043 | 1191 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed05g0268 | 1269 | FunFam | ABC transporter B family member 4 | 1014 | 1267 | - | - | |
| Sed05g0268 | 1269 | Gene3D | ABC transporter type 1, transmembrane domain | 115 | 994 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed05g0268 | 1269 | FunFam | ABC transporter B family member 1 | 380 | 629 | - | - | |
| Sed05g0268 | 1269 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1024 | 1260 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed05g0268 | 1269 | SMART | AAA_5 | 417 | 609 | IPR003593 | GO:0016887(InterPro) | |
| Sed05g0268 | 1269 | SMART | AAA_5 | 1051 | 1223 | IPR003593 | GO:0016887(InterPro) | |
| Sed05g0268 | 1269 | ProSitePatterns | ABC transporters family signature. | 1163 | 1177 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed05g0268 | 1269 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 68 | 355 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed05g0268 | 1269 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Sed05g0268 | 1269 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 694 | 1009 | - | - | |
| Sed05g0268 | 1269 | Pfam | ABC transporter | 409 | 557 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed05g0268 | 1269 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1017 | 1262 | IPR027417 | - | |
| Sed05g0268 | 1269 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 705 | 991 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed05g0268 | 1269 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Sed05g0268 | 1269 | SUPERFAMILY | ABC transporter transmembrane region | 683 | 1005 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed05g0268 | 1269 | ProSitePatterns | ABC transporters family signature. | 529 | 543 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed05g0268 | 1269 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 390 | 626 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed05g0268 | 1269 | CDD | ABC_MTABC3_MDL1_MDL2 | 390 | 628 | - | - | |
| Sed05g0268 | 1269 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 381 | 628 | IPR027417 | - | |
| Sed05g0268 | 1269 | Gene3D | - | 388 | 641 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g0268 | Sed-Chr5:1618835 | Sed11g2000 | Sed-Chr11:34177996 | 0.00E+00 | dispersed | |
| Sed01g4128 | Sed-Chr1:70081162 | Sed05g0268 | Sed-Chr5:1618835 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g0268 | K05658 | - | csv:101219304 | 2241.08 |