Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0275 ATGGCGACGTTTAATCTCTCTACCGGAGTGCCGATTCTGAAATCTGATTCTATCAGAATCGCCGACCGCCTTGCCTCGTGTAGACGCGTTTCTGATGCTTTTGGTATTGAAGCGAAGAGTGGAGGGATGTGCTTGCAATCGAAGCCAATCACTCCGATTCGATGCTTAGGAATCGCTGATCAGCGGGAAGTTGGATTCTATAATGGCTCTCTGGACACTAATCAGGACGTTTCGAACTCTACCTTTGAGCTTCAGTTGAATGGGTCATCACCTCTTAGCCGGACAAAGTTAGTGACGAAGTCTGGAAGGAAGACTAAAATAGTCTGCACCATTGGTCCTTCCACAAGTTCACGTGAAATGATATGGAAATTGGCGGAGACGGGAATGAATGTGGTGCGATTAAACATGTCCCATGGGGATCATTCTTCCCACCAAAAAACTATTGATTTGGTTAAGGAATATAACGCTCAATTTAAAGACAAAGTTATAGCCATTATGCTTGACACAAAGGGCCCTGAAGTTAGAAGTGGAGACGTACCTGAACCAATCTTGCTCAAAGAGGGACAAGAATTTAAGTTCACAATCAAAAGAGGAGTCAGCACAAAAGACACCGTTAGTGTTAACTATGATGACTTTATAAATGATGTAGAAGTTGGAGATATTATACTTGTTGACGGTGGAATGATGTCACTGGCTGTTAAGTCAAAGTCAGATGATTTGGTTAACTGTGTAGTCATTGATGGTGGCGAACTCAAATCGAGGCGTCATTTAAATGTTCGTGGAAAAAGTGCGACTCTGCCTTCTATAACAGACAAGGACTGGGAAGATATAAAGTTTGGGGTGGATAATCAGGTTGATTTTTATGCTGTTTCTTTTGTAAAGGATGCTAGAGTGGTTTACGAGCTGAAAGACTATCTGAAAAGCTGTAATGCAAATATTCACGTGATTGTGAAAATTGAAAGTGCAGACTCAATACCTAATCTTCAATCAATACTTTCAGCGTCAGATGGGGCAATGGTTGCTCGTGGAGATCTTGGGGCTGAACTTCCAATCGAGGAAGTTCCTTTATTGCAGGAAGATATTATCAAAAGGTGTCATAGCATGCAGAAACCAGTTATTGTAGCAACAAACATGCTGGAAAGCATGATTGATCATCCCATGCCAACTAGAGCCGAGGTTTCTGATATTGCTATTGCAGTACGAGAAGGTGCTGATGCAGTCATGCTTTCAGGCGAAACTGCTCATGGAAAGTATCCATTGAAGGCTGTGAAAGTGATGCATACTGTGGCTTTGAGGACGGAATCTAGTCTACCAATTAATACTACTACTCCAAATCAATTGAGTGTCTATAAGAGACATATGGGAGAAATGTTTGCTTTTCACTCCACCATTATGGCCAACACCCTCAATACTTCTATTGTTGTTTTCACAAGAACTGGCTCCATGGCTATACTCTTAAGTCATTATAGGCCCTGCTCTACCATCTTTGCCTTCACTGATGACGAAAGAATTAAACAAAGGCTGGTGCTTTATCATGGGGTCATGCCCATCTACATGCAGTTTTCAAACGATGCAGAAGAGACGTTCTCCAGAGCACTCAAGTTATTGCTGGATAAGGGCCATGTAGTAGAGGGAGACAACGTCACGCTTGTTCAAAGTGGAGCTCGACCAATTTGGCGGAAGGAATCTATTCACCACATTCAAGTACGTAGGATCCAAGGGTGA 1725 42.49 MATFNLSTGVPILKSDSIRIADRLASCRRVSDAFGIEAKSGGMCLQSKPITPIRCLGIADQREVGFYNGSLDTNQDVSNSTFELQLNGSSPLSRTKLVTKSGRKTKIVCTIGPSTSSREMIWKLAETGMNVVRLNMSHGDHSSHQKTIDLVKEYNAQFKDKVIAIMLDTKGPEVRSGDVPEPILLKEGQEFKFTIKRGVSTKDTVSVNYDDFINDVEVGDIILVDGGMMSLAVKSKSDDLVNCVVIDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKDARVVYELKDYLKSCNANIHVIVKIESADSIPNLQSILSASDGAMVARGDLGAELPIEEVPLLQEDIIKRCHSMQKPVIVATNMLESMIDHPMPTRAEVSDIAIAVREGADAVMLSGETAHGKYPLKAVKVMHTVALRTESSLPINTTTPNQLSVYKRHMGEMFAFHSTIMANTLNTSIVVFTRTGSMAILLSHYRPCSTIFAFTDDERIKQRLVLYHGVMPIYMQFSNDAEETFSRALKLLLDKGHVVEGDNVTLVQSGARPIWRKESIHHIQVRRIQG 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1693141 1701053 + Sed0015755.1 Sed05g0275 712901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0275 574 FunFam Pyruvate kinase 173 266 - -
Sed05g0275 574 NCBIfam pyruvate kinase 103 569 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed05g0275 574 FunFam Pyruvate kinase 268 433 - -
Sed05g0275 574 Pfam Pyruvate kinase, barrel domain 103 423 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed05g0275 574 Gene3D - 172 267 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Sed05g0275 574 PRINTS Pyruvate kinase family signature 392 410 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed05g0275 574 PRINTS Pyruvate kinase family signature 411 427 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed05g0275 574 PRINTS Pyruvate kinase family signature 161 177 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed05g0275 574 PRINTS Pyruvate kinase family signature 285 299 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed05g0275 574 PRINTS Pyruvate kinase family signature 315 341 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed05g0275 574 PRINTS Pyruvate kinase family signature 367 391 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed05g0275 574 PRINTS Pyruvate kinase family signature 342 366 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed05g0275 574 PANTHER PYRUVATE KINASE 98 553 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0004743(PANTHER)|GO:0005737(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0009570(PANTHER)|GO:0030955(InterPro)
Sed05g0275 574 ProSitePatterns Pyruvate kinase active site signature. 313 325 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Sed05g0275 574 Pfam Pyruvate kinase, alpha/beta domain 465 552 IPR015795 -
Sed05g0275 574 SUPERFAMILY PK beta-barrel domain-like 172 263 IPR011037 -
Sed05g0275 574 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 102 437 IPR015813 GO:0003824(InterPro)
Sed05g0275 574 FunFam Pyruvate kinase 434 553 - -
Sed05g0275 574 Gene3D - 103 433 IPR040442 -
Sed05g0275 574 SUPERFAMILY PK C-terminal domain-like 421 570 IPR036918 -
Sed05g0275 574 Gene3D - 434 552 IPR036918 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0275 K00873 - - csv:101222828 884.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0275 Sed-Chr5:1693141 Sed07g0971 Sed-Chr7:7139839 2.10E-208 dispersed
Sed05g0275 Sed-Chr5:1693141 Sed13g0097 Sed-Chr13:653614 1.30E-208 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72