Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0289 ATGGCTGGTCTGGATTTGGGTAATCACTATATTCACCAACTTCAAAGACCTGATTTCAATCTTCATCATCAACATCAGCAGATTCCGGACTCTCAATCTGGCCATGACGACGGACCCCATCAACCGTTGGAGTTCGTCTCCACAGCCCCGGACACGGTGGCCTCTCGCCGTCCCCGTGGCCGTCCACCGGGCTCCAAGAACAAGGAGAGGCCCCCAGTTATCATCACCCGGGAGAGCGCCAATACCCTACGCGCTCACATCCTCGAGATTGGCAGCGGTTGCGATGTCTTCGATTGCATCAACACCTATGCCCGCCGACGCCAGCGGGGGATCTGCATCTTGAGCGGCAGCGGAATGGTAACGAATGTCAACTTGCGCCAACCGACCGCTGCTGGCGCGGTGTTAACCCTACCAGGGAGGTTTGAGATACTGTCGCTTACTGGATCTTTCCTGCCGCCGCCTGCTCCTCCCGGCGCTACCAGTTTGACCATTTACTTGGCCGGCGGGCAAGGCCAAGTGGTGGGTGGCAACGTCGTAGGAGAGTTGGTGGCGGTAGGACCAGTGACAGTCATCGCTGCTTCGTTTACTAACGTAGCGTACGAAAGACTGCCACTGGAAGAACAAGAACAACAAGAACAAGAACAACATCAGATGCAACTACCGACATCGCAGAGCGACATCGGTAACAATAACCTATTTCCAGATCCATCTTCTGGGGTTCCTTTCTTCAATTTGCCTCTAAATATGCAAAACCAAATTCAGCTACCATTTTGA 774 53.75 MAGLDLGNHYIHQLQRPDFNLHHQHQQIPDSQSGHDDGPHQPLEFVSTAPDTVASRRPRGRPPGSKNKERPPVIITRESANTLRAHILEIGSGCDVFDCINTYARRRQRGICILSGSGMVTNVNLRQPTAAGAVLTLPGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAVGPVTVIAASFTNVAYERLPLEEQEQQEQEQHQMQLPTSQSDIGNNNLFPDPSSGVPFFNLPLNMQNQIQLPF 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1834335 1835577 + Sed0005615.1 Sed05g0289 712915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0289 257 CDD DUF296 84 167 IPR005175 -
Sed05g0289 257 Gene3D - 83 218 - -
Sed05g0289 257 ProSiteProfiles PPC domain profile profile. 80 216 IPR005175 -
Sed05g0289 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 226 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed05g0289 257 MobiDBLite consensus disorder prediction 214 233 - -
Sed05g0289 257 MobiDBLite consensus disorder prediction 23 74 - -
Sed05g0289 257 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 196 IPR005175 -
Sed05g0289 257 MobiDBLite consensus disorder prediction 207 233 - -
Sed05g0289 257 PIRSF ESCAROLA 4 254 IPR014476 GO:0003680(InterPro)
Sed05g0289 257 FunFam AT-hook motif nuclear-localized protein 83 211 - -
Sed05g0289 257 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0122 Sed-Chr2:26707387 Sed05g0289 Sed-Chr5:1834335 1.90E-79 dispersed
Sed04g2132 Sed-Chr4:35516710 Sed05g0289 Sed-Chr5:1834335 1.70E-77 dispersed
Sed05g0289 Sed-Chr5:1834335 Sed12g0290 Sed-Chr12:1686312 1.10E-79 dispersed
Sed01g4099 Sed-Chr1:69893436 Sed05g0289 Sed-Chr5:1834335 2.50E-102 wgd
Sed04g0827 Sed-Chr4:7002495 Sed05g0289 Sed-Chr5:1834335 2.20E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0289 - - - 0.0