Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0301 ATGGGGTCTTATGGAAGCCCTAAGACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGCAGTGTGTATTGTCCTCAATGGTGCTACATCATGTTTTCACCTCCACAACCTTTAGAGTTCACAGATGATGATTCAGGCCTTAATTTTTCACCTCTTGTGATTGCTATTATTGGAATTCTGGCTAGTGCTGTTCTTCTTTTAAGCTATTACACCTTCATTTCAAAGTATTGTGGCAACACCAATCGTTTGTCTAGGACTAGAGTTCATGACCCAAATGAGGAATTTGAAGATAATCACATCCCAACTCTTCATGAGCCATGGCATGTTGCTACTACTGGCTTGGATGAAGCACTGATCAAGTCCATTACTGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCACTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTCCATCTTCTATGCATTGATACTTGGCTTAAATCACACTCTAATTGCCCGTTGTGCCGTGCAAATATCGTCTCTGTCACCGCTTCTTCTCCGGTTCAACTGCCTGCAACAAGCACTGTTAATCCCATAACTAGTGAGGTCATGCCAGTGACGTCTCGGGAAAATGACCATGAGGATGTTTCACAAGAATCTGGAAGAAGTTTCGGCAATGAGGATGCGAAGAACTCTGTTCGCGCTTTCAGTGATCTCGGAAATCTGGACAAGAGAGATACTGTCATTGAGCTTAGAGATGGAATATTGCAGCAAATTAGAAGGTCTATTTCAATGGATCATTGCAGCCAAAGCCATATCATTATCGCTGATGTCTTACGTTTTAACGGAGATGAGTTCGGAGCTATCGATATAGCAGGAAGTTCAGGAGGTGTGGGATCATCCAAACATTCAATGAGAGAAGATATCAAGTCAAGTCATAGAAAAAGAATTTTACATTATGTAATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTTCTCACAAGGCATGAAAGAGAACACATAGGAATTGCCCCTGTCTAA 1083 41.55 MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAIIGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSNCPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKNSVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDIAGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1911640 1913568 + Sed0023638.1 Sed05g0301 712927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0301 360 PANTHER RING-H2 FINGER PROTEIN ATL16 27 319 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Sed05g0301 360 FunFam RING-H2 finger protein ATL54 118 191 - -
Sed05g0301 360 MobiDBLite consensus disorder prediction 216 230 - -
Sed05g0301 360 SMART ring_2 143 184 IPR001841 -
Sed05g0301 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Sed05g0301 360 Pfam Ring finger domain 142 185 IPR001841 -
Sed05g0301 360 SUPERFAMILY RING/U-box 131 193 - -
Sed05g0301 360 CDD RING-H2_EL5-like 142 185 - -
Sed05g0301 360 MobiDBLite consensus disorder prediction 214 236 - -
Sed05g0301 360 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1537 Sed-Chr2:51076612 Sed05g0301 Sed-Chr5:1911640 4.50E-62 dispersed
Sed04g2114 Sed-Chr4:35308499 Sed05g0301 Sed-Chr5:1911640 3.90E-51 dispersed
Sed05g0105 Sed-Chr5:627413 Sed05g0301 Sed-Chr5:1911640 3.60E-25 dispersed
Sed05g0301 Sed-Chr5:1911640 Sed12g0332 Sed-Chr12:2087502 1.20E-63 dispersed
Sed01g4114 Sed-Chr1:70029083 Sed05g0301 Sed-Chr5:1911640 5.60E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0301 - - - 0.0