Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g0301 | ATGGGGTCTTATGGAAGCCCTAAGACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGCAGTGTGTATTGTCCTCAATGGTGCTACATCATGTTTTCACCTCCACAACCTTTAGAGTTCACAGATGATGATTCAGGCCTTAATTTTTCACCTCTTGTGATTGCTATTATTGGAATTCTGGCTAGTGCTGTTCTTCTTTTAAGCTATTACACCTTCATTTCAAAGTATTGTGGCAACACCAATCGTTTGTCTAGGACTAGAGTTCATGACCCAAATGAGGAATTTGAAGATAATCACATCCCAACTCTTCATGAGCCATGGCATGTTGCTACTACTGGCTTGGATGAAGCACTGATCAAGTCCATTACTGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCACTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTCCATCTTCTATGCATTGATACTTGGCTTAAATCACACTCTAATTGCCCGTTGTGCCGTGCAAATATCGTCTCTGTCACCGCTTCTTCTCCGGTTCAACTGCCTGCAACAAGCACTGTTAATCCCATAACTAGTGAGGTCATGCCAGTGACGTCTCGGGAAAATGACCATGAGGATGTTTCACAAGAATCTGGAAGAAGTTTCGGCAATGAGGATGCGAAGAACTCTGTTCGCGCTTTCAGTGATCTCGGAAATCTGGACAAGAGAGATACTGTCATTGAGCTTAGAGATGGAATATTGCAGCAAATTAGAAGGTCTATTTCAATGGATCATTGCAGCCAAAGCCATATCATTATCGCTGATGTCTTACGTTTTAACGGAGATGAGTTCGGAGCTATCGATATAGCAGGAAGTTCAGGAGGTGTGGGATCATCCAAACATTCAATGAGAGAAGATATCAAGTCAAGTCATAGAAAAAGAATTTTACATTATGTAATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTTCTCACAAGGCATGAAAGAGAACACATAGGAATTGCCCCTGTCTAA | 1083 | 41.55 | MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAIIGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSNCPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKNSVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDIAGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1911640 | 1913568 | + | Sed0023638.1 | Sed05g0301 | 712927 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g0301 | 360 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 27 | 319 | IPR044600 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
Sed05g0301 | 360 | FunFam | RING-H2 finger protein ATL54 | 118 | 191 | - | - | |
Sed05g0301 | 360 | MobiDBLite | consensus disorder prediction | 216 | 230 | - | - | |
Sed05g0301 | 360 | SMART | ring_2 | 143 | 184 | IPR001841 | - | |
Sed05g0301 | 360 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 193 | IPR013083 | - | |
Sed05g0301 | 360 | Pfam | Ring finger domain | 142 | 185 | IPR001841 | - | |
Sed05g0301 | 360 | SUPERFAMILY | RING/U-box | 131 | 193 | - | - | |
Sed05g0301 | 360 | CDD | RING-H2_EL5-like | 142 | 185 | - | - | |
Sed05g0301 | 360 | MobiDBLite | consensus disorder prediction | 214 | 236 | - | - | |
Sed05g0301 | 360 | ProSiteProfiles | Zinc finger RING-type profile. | 143 | 185 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1537 | Sed-Chr2:51076612 | Sed05g0301 | Sed-Chr5:1911640 | 4.50E-62 | dispersed | |
Sed04g2114 | Sed-Chr4:35308499 | Sed05g0301 | Sed-Chr5:1911640 | 3.90E-51 | dispersed | |
Sed05g0105 | Sed-Chr5:627413 | Sed05g0301 | Sed-Chr5:1911640 | 3.60E-25 | dispersed | |
Sed05g0301 | Sed-Chr5:1911640 | Sed12g0332 | Sed-Chr12:2087502 | 1.20E-63 | dispersed | |
Sed01g4114 | Sed-Chr1:70029083 | Sed05g0301 | Sed-Chr5:1911640 | 5.60E-175 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g0301 | - | - | - | 0.0 |