Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0302 ATGAGTCTTGATGCTCTTTCTTGCAATGACTTATTCAACTTCATCATCTCCGCCACCCCGAACGCTTCCCATGGCCACCCACGACTCATGGGAGACTACATTTTCTCGGACGACAAGTGTACTTGGAAACATCAAGGCGATCACAATCAACATCAAAGCGGGTTGGAACATCACGCGGAAGCCAATTCCACGGTGTCGAGAAAACGTCGCTCGGAGGATGCAGAAAGCAGCCGAGCGACGCCCGCGCAACCCGGGAAGAAGAAGAGGAAGAGAAAACCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACATATTGCTGTTGAAAGAAACCGCCGCAAACAAATGAATGAACATCTTTCAATGTTACGTTCTCTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCTTCCATAGTAGGTGGGGCAGTTGAGTTTGTGAAGGAATTGGAACATGTTCTATCAACTCTTGAAGCTAAGAAGCTACAAATCATAAATCAAGAAGAAGAAGAAGAAGAGAATAACAATAATAATAATAATGAAGATTCAATGAGAAGGAAATTGTTTTCAGTTTCAGCTCCATTTGCAACATTGTTGATGCATAATTCAGATTCTCAAAGCTCAACCAAATACACTTCAAAATCAAAGGCTTCTTCAGCTGACATTGAAGTGACTTTGATTGAAACTCATGCAAATCTCAGAATCCTCTCCACAAGAACACATAGACAGCTCTTGAAACTCATTGCTGGCTTGCAAGCTCTTCGCCTCACTATTCTTCATTTCAATGTCACTGATTTTCACCCATTGGTTCTTTACTCCATCAGCCTCAAGGTTGAAGAAGGGTGTCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCAGATGGTGAGAATAATTGAGGAAGAAGCTGTTTTGTGTTAA 942 42.36 MSLDALSCNDLFNFIISATPNASHGHPRLMGDYIFSDDKCTWKHQGDHNQHQSGLEHHAEANSTVSRKRRSEDAESSRATPAQPGKKKRKRKPKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSMLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKLQIINQEEEEEENNNNNNNEDSMRRKLFSVSAPFATLLMHNSDSQSSTKYTSKSKASSADIEVTLIETHANLRILSTRTHRQLLKLIAGLQALRLTILHFNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHQMVRIIEEEAVLC 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1914558 1917813 - Sed0027390.1 Sed05g0302 712928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0302 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 168 IPR036638 GO:0046983(InterPro)
Sed05g0302 313 MobiDBLite consensus disorder prediction 43 105 - -
Sed05g0302 313 Gene3D - 96 183 IPR036638 GO:0046983(InterPro)
Sed05g0302 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983(InterPro)
Sed05g0302 313 SMART finulus 110 161 IPR011598 GO:0046983(InterPro)
Sed05g0302 313 Coils Coil 152 192 - -
Sed05g0302 313 PANTHER MAX DIMERIZATION, MAD 63 305 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g0302 313 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983(InterPro)
Sed05g0302 313 MobiDBLite consensus disorder prediction 43 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0302 Sed-Chr5:1914558 Sed11g0309 Sed-Chr11:2818125 4.20E-49 dispersed
Sed05g0302 Sed-Chr5:1914558 Sed05g0303 Sed-Chr5:1914558 5.00E-143 tandem
Sed01g4115 Sed-Chr1:70032610 Sed05g0302 Sed-Chr5:1914558 6.90E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38440 PF00010 HLH 1.10E-10 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0302 - - - 0.0