Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0316 ATGGAGATTCTGAAGATCTTTGTGGTTGTAATATTTGGTGTGGTTTTGCATGGAGTTCATAGTTTAAGTGATGATGGACCTTTGGTTTTTGACTATTACAAAGAAACATGCCCCTTGGTTGAAGATATTGTTCGACGACAAGTCGAGATCGCCGTGCTCAAAGATCCTCGCATGGCTGCTTCACTTCTTCGCTTGCATTTTCACGATTGTTTCGTTATGGGATGCGATGCATCAGTTCTTTTAGACAGTTATGAGGAGATGGTGAGTGAAAAACAAGCAACTCCGAACTTGAACTCTCTTCGCGGATTCGAAGTTATTGATGAGATAAAATACATATTAGAAGAAGCTTGTCCGTACACAGTTTCTTGTGCTGATATTTTGACTATTGCGGCTCGTGATTCTGTCGTGCTTAGAGGGGGACCTGGATGGGAAGTTTTAGTGGGAAGAAAAGACTCACTGGAAGCAAGCTTTGATGGAGCCAATAAATACATCCCTGCTCCCAATTCCTCTCTTGAGGCCTTAATTGCCAATTTTGAAGTACAGGGCCTTGATGTTGGAGACTTGGTTGCTCTATCAGGAAGCCACACAATAGGGAAAGCAAGATGCCTGAGTTTCAGGCAAAGAACATACCAAATGAACTCATTGGAAGAACATGACAGGTACAAGAGATACAACACATTTAGAAGAATTTTAAGGTCAATTTGCCCTGAAACAGGGCAAGACCAGAGGGTAGCACCCTTAGATTTTGAGACACCTGCAAGGTTTGACAACCACTATTTCCTCAACATTCTTCAAGGAAAAGGGCTTTTGGGGTCTGACAATGTGCTCATAACCCAAGATTATGAAGGCCATATTAGAAGACAAGTTTGGAGCTATGCTTCTGATCAAACCCTTTTCTTTGCTTCCTTTGTTAATTCCATTGTGAAGATGGGGAATATCAATGTTTTGACTGGCCCACAAGGTGAAGTAAGGAGGAATTGTAGGTTTATCAATCATTAG 999 41.64 MEILKIFVVVIFGVVLHGVHSLSDDGPLVFDYYKETCPLVEDIVRRQVEIAVLKDPRMAASLLRLHFHDCFVMGCDASVLLDSYEEMVSEKQATPNLNSLRGFEVIDEIKYILEEACPYTVSCADILTIAARDSVVLRGGPGWEVLVGRKDSLEASFDGANKYIPAPNSSLEALIANFEVQGLDVGDLVALSGSHTIGKARCLSFRQRTYQMNSLEEHDRYKRYNTFRRILRSICPETGQDQRVAPLDFETPARFDNHYFLNILQGKGLLGSDNVLITQDYEGHIRRQVWSYASDQTLFFASFVNSIVKMGNINVLTGPQGEVRRNCRFINH 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1941109 1943097 - Sed0009074.1 Sed05g0316 712942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0316 332 PANTHER PEROXIDASE 72-RELATED 12 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 CDD secretory_peroxidase 28 330 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g0316 332 Pfam Peroxidase 44 294 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Sed05g0316 332 Gene3D - 32 331 - -
Sed05g0316 332 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Sed05g0316 332 FunFam Peroxidase 165 310 - -
Sed05g0316 332 ProSiteProfiles Plant heme peroxidase family profile. 27 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 FunFam Peroxidase 31 171 - -
Sed05g0316 332 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 SUPERFAMILY Heme-dependent peroxidases 28 331 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g0316 332 Gene3D Peroxidase, domain 2 165 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0316 Sed-Chr5:1941109 Sed13g1017 Sed-Chr13:8299105 9.80E-89 dispersed
Sed05g0316 Sed-Chr5:1941109 Sed07g1667 Sed-Chr7:14402524 2.00E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0316 K00430 - csv:116402797 550.436