Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0366 ATGAGAGAGGCGGCGGCGGTGAACTCCGTCGACGTGGAGGGTGATTGTGCGGCGGCGGAGATCGACGATTTGGCGGCGGAGACGGTGAGTATGGGCGCTCGTAAACCTAACGGAGATGGCGGTTCGAGTAGGGCTGGGATTGGGATTAAGTGGGAGCGGTTTTTGCCGAAGATGATTCTTAGGGTTTTGGTTGTCGAAGCCGATGATTCCACCAGGCAGATTATCGCTGCCCTTCTTCGCAAGTGCTGCTATCGAGTTGTTGCTGTTCCCGATGGCTTGAAAGCATGGGAGATTCTAAAAGAAAGGCCTCATAGTGTAGATCTTATATTGGCGGAAGTTGAATTGCCATCTATATCAGGATTTTCTCTGCTATCTCTAATTATGGAGCACAAGACTTGCAAAAATATTCCTGTTATAATGATGTCGTCGGAAGATTCGATCAGCACTGTTTTTAAATGCATGCTGAAAGGTGCAGCTGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAAGAATCTGTGGCAACATGTTTTGAGAAGACAAGCATCATCCAATGTGAGAACTGTCATTGAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAACCAGTCCACCGATTATGTTGCTGGAGTTCAGAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGTAGATTTTGAGGCTGGAACAAAGTTGCAGGAAAGTTCACAGCCTAGGCAGGGAAAAGCCTCTTCCTATGACTTCAAGCTACAGAAAGATGAACGTCAGATCAATTTGAGTGAGAGATTGGTTATGCATGAAAATGAATCTAGAGGAATGGCTACGAGTTGTTATGTCAATGCTGATTTACCAATTACACTTAGCATGGGTCTTGAGCCAATCAATGATGGGAGAAGTTCTAATACTGGTAGTGAAGCTGGTGATATTAAGGATTTGCTTGTCAACCCATCAAGAAATGCAACTGCATTGAATCATGCCTGTACTAAATATCCCGATAGCTACCGAAGGAGTTCTCCTACCACGGATGCTGCCACAAACAATTTTAGCTCTGCCCTTCATTTGGATCTTTCCTTGAGAAGATGTCAACCTAATGGTTTTGAGGACCGTGCTGTAGAAGGACGGACTACCCTCAAACATTCCAGTGCTTCAGCTTTTACAAGATACACTTTCAGGCCGTTGCAAACACTTCAAGCAAAATCAAGCAGTCTCTGTGATGAACAAAAGGAATTCGGCGGCAATCCCGAGCATTTTGGAATTACTTCTGCTACTTCTACCTCTAATACCATTAATCCTGCAAAAAGCCTGCAGAAGAGTAGTACTTCTATGCCTCCGATAACCAGTCAATCTACTCACTCTGAAGTTGCAGATACAGTGAAGGATTTGATGTCTAATAATCAATCCTCGGGCTATGGCTCTTTACTCTCTCCCAACTTGTGCGCACAATGTGGTACGCCATCGTATCCGTGTCCAATTTTGGTCACACATCCGGAACACGTCGTCGCAAATCAGACGGTTTATCCCTTTAACCTTGAGAATCATAATTTGGAGCGATTTCTGAACCAGCATCATACCGCCAACATAAGCAATCTAGCAAGCCGGCAGATAGAAAACTCAGGGCAAGAGTTGGAGTGTGCAGGAAATCAAGGTCGTATGTCACCTATCACTGATCAAAGTGAAACTCATGTTCGACGTATGGGATATCCGAGCACATGTGGGAGCAATAGCAACGTCAACCATGTTGGCATTACTGAAACACATGAGAGCAAAAATGAAGAAGCTTTGTTTCGTCAAGGAGGAGATTCTCACTGGAGCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACAGAAGCGAAAAGATCGATGTTATGAGAAGAAGGTGCGATACGAGAGCAGGAAAAAGCTGGCCGAGCAGCGTCCTCGAGTGAAGGGACAGTTTGTCCGTAGAGTATACACGGATTCATTGCCTGCAGAAACCAATGCCAATACATCCCAATAG 2031 44.85 MREAAAVNSVDVEGDCAAAEIDDLAAETVSMGARKPNGDGGSSRAGIGIKWERFLPKMILRVLVVEADDSTRQIIAALLRKCCYRVVAVPDGLKAWEILKERPHSVDLILAEVELPSISGFSLLSLIMEHKTCKNIPVIMMSSEDSISTVFKCMLKGAADYLVKPLRRNELKNLWQHVLRRQASSNVRTVIEEKVEVTSENETASNQSTDYVAGVQRNNKNIEKGSDTQSSCTKVDFEAGTKLQESSQPRQGKASSYDFKLQKDERQINLSERLVMHENESRGMATSCYVNADLPITLSMGLEPINDGRSSNTGSEAGDIKDLLVNPSRNATALNHACTKYPDSYRRSSPTTDAATNNFSSALHLDLSLRRCQPNGFEDRAVEGRTTLKHSSASAFTRYTFRPLQTLQAKSSSLCDEQKEFGGNPEHFGITSATSTSNTINPAKSLQKSSTSMPPITSQSTHSEVADTVKDLMSNNQSSGYGSLLSPNLCAQCGTPSYPCPILVTHPEHVVANQTVYPFNLENHNLERFLNQHHTANISNLASRQIENSGQELECAGNQGRMSPITDQSETHVRRMGYPSTCGSNSNVNHVGITETHESKNEEALFRQGGDSHWSSQREAALTKFRQKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVYTDSLPAETNANTSQ 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2417260 2422382 - Sed0002942.1 Sed05g0366 712992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0366 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 46 268 IPR045279 GO:0009736(InterPro)
Sed05g0366 676 ProSiteProfiles CCT domain profile. 618 660 IPR010402 GO:0005515(InterPro)
Sed05g0366 676 Gene3D - 58 284 - -
Sed05g0366 676 MobiDBLite consensus disorder prediction 428 464 - -
Sed05g0366 676 CDD psREC_PRR 62 165 - -
Sed05g0366 676 MobiDBLite consensus disorder prediction 240 255 - -
Sed05g0366 676 Pfam Response regulator receiver domain 62 173 IPR001789 GO:0000160(InterPro)
Sed05g0366 676 MobiDBLite consensus disorder prediction 240 260 - -
Sed05g0366 676 ProSiteProfiles Response regulatory domain profile. 61 179 IPR001789 GO:0000160(InterPro)
Sed05g0366 676 SMART REC_2 60 175 IPR001789 GO:0000160(InterPro)
Sed05g0366 676 SUPERFAMILY CheY-like 60 186 IPR011006 -
Sed05g0366 676 Pfam CCT motif 618 660 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0366 Sed-Chr5:2417260 Sed14g0437 Sed-Chr14:4453361 3.40E-56 dispersed
Sed10g1897 Sed-Chr10:35776240 Sed05g0366 Sed-Chr5:2417260 1.50E-06 dispersed
Sed10g1898 Sed-Chr10:35776240 Sed05g0366 Sed-Chr5:2417260 1.30E-06 dispersed
Sed12g2230 Sed-Chr12:32696280 Sed05g0366 Sed-Chr5:2417260 4.60E-06 dispersed
Sed01g3441 Sed-Chr1:63510774 Sed05g0366 Sed-Chr5:2417260 7.60E-247 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38446 PF00072 Response_reg 3.70E-20 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0366 K12130 - csv:101209788 957.592