Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0385 ATGGCTTCGGATCCGAAGGTTCATCTGTTTGAAGAAGTGGCAAAGCATAACAAAACGAAAGATTGTTGGCTTGTAATCTCTGGGAAGGTTTATGATGTAACTCCTTTCATGGAGGATCACCCGGGAGGCGATGAAGTATTATTGTCTGCAACTGGAAAAGATGCCACGAACGATTTTGAGGACGTCGGGCACAGCGATGCGGCAAGAGAAATGTTGGACAAATATTACATCGGCGAAATCGATCCCTCAAAAGCTCCCTCGAAGAAGATTAACATTCCATCACAACAAACCCAGTTCAACCAAGATAAGACACCTGAGTTTGTGATTAAGATCTTGCAGTTTCTGGTTCCCATTTTGATTTTGGGTTTGGCATTTGCTGTTCGACACTACACCAAGAATGAATGA 405 43.21 MASDPKVHLFEEVAKHNKTKDCWLVISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDAAREMLDKYYIGEIDPSKAPSKKINIPSQQTQFNQDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2623399 2626664 - Sed0016790.1 Sed05g0385 713011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0385 134 SMART Cyt_b5_2 8 81 IPR001199 -
Sed05g0385 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 85 IPR036400 -
Sed05g0385 134 Gene3D - 1 86 IPR036400 -
Sed05g0385 134 PANTHER CYTOCHROME B5 6 132 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Sed05g0385 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Sed05g0385 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Sed05g0385 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Sed05g0385 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Sed05g0385 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Sed05g0385 134 FunFam Cytochrome b5 type B 2 85 - -
Sed05g0385 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Sed05g0385 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3466 Sed-Chr1:63773551 Sed05g0385 Sed-Chr5:2623399 1.80E-43 dispersed
Sed04g0087 Sed-Chr4:515399 Sed05g0385 Sed-Chr5:2623399 1.50E-24 dispersed
Sed04g2056 Sed-Chr4:34967221 Sed05g0385 Sed-Chr5:2623399 5.20E-41 dispersed
Sed05g0385 Sed-Chr5:2623399 Sed12g0390 Sed-Chr12:2347770 4.70E-50 dispersed
Sed05g0385 Sed-Chr5:2623399 Sed05g0386 Sed-Chr5:2623399 2.10E-74 tandem
Sed03g1745 Sed-Chr3:11516153 Sed05g0385 Sed-Chr5:2623399 2.40E-16 transposed
Sed01g3465 Sed-Chr1:63773551 Sed05g0385 Sed-Chr5:2623399 2.60E-64 wgd
Sed02g1783 Sed-Chr2:52493553 Sed05g0385 Sed-Chr5:2623399 7.10E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0385 K23490 - csv:101207109 258.07